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This is the package for statistical analysis

1. Install python3, with packages emcee, h5py, hic, numpy, PyYAML, scikit-learn (>= 0.18), scipy, pandas, pathlib, hsluv, matplotlib. Use pip to install them if needed

2. If you don't have R, download R from here

3. Open an R Console instance by opening the R app or by typing R in the command line.

4. In the R console, type the command install.packages('lhs') and pick an appropriate download mirror if prompted. To ensure the package was properly installed, type library(lhs) in the R console. If that command runs without error, the package is installed. Close the R console by typing quit().

5. Clone this git repository

6. Open Terminal (OSX, Linux) or Windows Command Prompt (Windows).

7. Navigate to the downloaded/cloned git repository.

8. Type: jupyter notebook. This will open Jupyter iPython Notebook in a web browser. In Jupyter, open Example.ipynb, and run the first cell. If it runs without error, then you should be properly set up for the program.

9. Execute all cells for an example of an analysis