GitHub - JCVI-Cloud/galaxy-tools-prok: Modified Galaxy interface for the Prok pipelines

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
contrib		contrib
cron		cron
database		database
display_applications		display_applications
eggs		eggs
external_service_types		external_service_types
lib		lib
locale		locale
openid		openid
scripts		scripts
static		static
templates		templates
test-data		test-data
test		test
tool-data		tool-data
tools		tools
LICENSE.txt		LICENSE.txt
README.txt		README.txt
buildbot_setup.sh		buildbot_setup.sh
community_wsgi.ini		community_wsgi.ini
community_wsgi.ini.sample		community_wsgi.ini.sample
create_db.sh		create_db.sh
datatypes_conf.xml		datatypes_conf.xml
datatypes_conf.xml.sample		datatypes_conf.xml.sample
demo_sequencer_wsgi.ini.sample		demo_sequencer_wsgi.ini.sample
dist-eggs.ini		dist-eggs.ini
distributed_object_store_conf.xml.sample		distributed_object_store_conf.xml.sample
eggs.ini		eggs.ini
external_service_types_conf.xml		external_service_types_conf.xml
external_service_types_conf.xml.sample		external_service_types_conf.xml.sample
extract_dataset_parts.sh		extract_dataset_parts.sh
integrated_tool_panel.xml		integrated_tool_panel.xml
manage_db.sh		manage_db.sh
manage_tools.sh		manage_tools.sh
migrated_tools_conf.xml		migrated_tools_conf.xml
migrated_tools_conf.xml.sample		migrated_tools_conf.xml.sample
openid_conf.xml		openid_conf.xml
openid_conf.xml.sample		openid_conf.xml.sample
paster.log		paster.log
paster.log.17_29		paster.log.17_29
paster.pid		paster.pid
reports_wsgi.ini		reports_wsgi.ini
reports_wsgi.ini.sample		reports_wsgi.ini.sample
run.sh		run.sh
run_community.sh		run_community.sh
run_demo_sequencer.sh		run_demo_sequencer.sh
run_functional_tests.sh		run_functional_tests.sh
run_galaxy_listener.sh		run_galaxy_listener.sh
run_reports.sh		run_reports.sh
run_unit_tests.sh		run_unit_tests.sh
set_metadata.sh		set_metadata.sh
setup_rabbitmq.sh		setup_rabbitmq.sh
shed_tool_conf.xml		shed_tool_conf.xml
shed_tool_conf.xml.sample		shed_tool_conf.xml.sample
tool_conf.xml		tool_conf.xml
tool_conf.xml.main		tool_conf.xml.main
tool_conf.xml.sample		tool_conf.xml.sample
tool_data_table_conf.xml		tool_data_table_conf.xml
tool_data_table_conf.xml.cloud		tool_data_table_conf.xml.cloud
tool_data_table_conf.xml.oldlocstyle		tool_data_table_conf.xml.oldlocstyle
tool_data_table_conf.xml.sample		tool_data_table_conf.xml.sample
tool_data_table_conf.xml_DEF		tool_data_table_conf.xml_DEF
tool_list.py		tool_list.py
tool_sheds_conf.xml		tool_sheds_conf.xml
tool_sheds_conf.xml.sample		tool_sheds_conf.xml.sample
universe_wsgi.ini		universe_wsgi.ini
universe_wsgi.ini.sample		universe_wsgi.ini.sample

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GALAXY
======
http://galaxyproject.org/

The latest information about Galaxy is always available via the Galaxy
website above.

HOW TO START
============
Galaxy requires Python 2.5, 2.6 or 2.7. To check your python version, run:

% python -V
Python 2.4.4

Start Galaxy:

% sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

You may wish to make changes from the default configuration.  This can be done
in the universe_wsgi.ini file.  Tools are configured in tool_conf.xml.  Details
on adding tools can be found on the Galaxy website (linked above).

Not all dependencies are included for the tools provided in the sample
tool_conf.xml.  A full list of external dependencies is available at:

http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies