GitHub - Khev/coarse_grain

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commits
2009_56m_cdls_upstate_ny.tif		2009_56m_cdls_upstate_ny.tif
AnalyticMFPT.ipynb		AnalyticMFPT.ipynb
AnalyticMFPT.py		AnalyticMFPT.py
AnalyticMFPT.pyc		AnalyticMFPT.pyc
BottleNeck.png		BottleNeck.png
CoarseGrainLibrary.ipynb		CoarseGrainLibrary.ipynb
CoarseGrainLibrary.py		CoarseGrainLibrary.py
CoarseGrainLibrary.pyc		CoarseGrainLibrary.pyc
MainClumping.ipynb		MainClumping.ipynb
MainClumping.py		MainClumping.py
MemoryProfiling.ipynb		MemoryProfiling.ipynb
MemoryProfiling.py		MemoryProfiling.py
MemoryProfiling2.ipynb		MemoryProfiling2.ipynb
MemoryProfiling2.py		MemoryProfiling2.py
MemoryProfiling3.ipynb		MemoryProfiling3.ipynb
MemoryProfiling3.py		MemoryProfiling3.py
OptimisedClumping.ipynb		OptimisedClumping.ipynb
OptimisedClumping.py		OptimisedClumping.py
OptimisedClumping.pyc		OptimisedClumping.pyc
ReadMe.txt		ReadMe.txt
RingStructureCoarseGraining.ipynb		RingStructureCoarseGraining.ipynb
RingStructureCoarseGraining.py		RingStructureCoarseGraining.py
RingStructureCoarseGraining.pyc		RingStructureCoarseGraining.pyc
SpectralCoarseGraining.ipynb		SpectralCoarseGraining.ipynb
SpectralCoarseGraining.py		SpectralCoarseGraining.py
SpectralCoarseGraining.pyc		SpectralCoarseGraining.pyc
Timing.ipynb		Timing.ipynb
Timing.py		Timing.py

Repository files navigation

The .dat file contais the CDL data. 

The fractal notebooks are Daniel's work, from which I took some functions to read the CDL data (.ipynb is an Interactive PYthon NoteBook, while the .py is a normal python file, although since it was created from the .ipynb, it contains commands like <cell>, left over from original format). 

GenerateRipsComplex.ipynb, as the name suggests, is the main file. The execution time becomes ~ hours for rips radius ~ 6 units = 6 x 30m. 

make_mesh.ipynb is intermediary rough work.

XWheatResults are the positions of XWheat as [[x1,y1], [x2,y2], ….], exported using the pickle function.

Clumping.ipynb is a work-in-progress to coarse-grain graphs without destroying behavior. Specifically, the number of connected components.