Membrane and Synapse Detection

Convolutional network for membrane and synapse detection.

Install and upgrade all dependencies:

pip install -U numpy theano matplotlib pyyaml pil scipy mahotas gala

Clone repository:

git clone https://github.com/Rhoana/windowed-prediction.git

Further documentation can be found here (under progress).

Name		Name	Last commit message	Last commit date
Latest commit History 166 Commits
config		config
data		data
evaluation		evaluation
layers		layers
lib		lib
misc		misc
models		models
post_process		post_process
pre_process		pre_process
results		results
util		util
.gitignore		.gitignore
README.md		README.md
__init__.py		__init__.py
clean_run_data.sh		clean_run_data.sh
evaluate.py		evaluate.py
evaluate_F1.py		evaluate_F1.py
evaluate_VI.py		evaluate_VI.py
latest_run.txt		latest_run.txt
plot.py		plot.py
process.py		process.py
run_data.dat		run_data.dat
runner.py		runner.py
test_dependencies.py		test_dependencies.py
watershed.py		watershed.py

Rhoana/windowed-prediction