1. Clone the CellCnn repository

git clone https://github.com/eiriniar/CellCnn.git

2. Install the CellCnn dependencies

pip install -r https://raw.githubusercontent.com/eiriniar/CellCnn/master/requirements.txt

3. To install CellCnn, run the following command after replacing path_to_CellCnn with the actual path in your system

pip install -e path_to_CellCnn/CellCnn

Examples are provided in the subfolder CellCnn/cellCnn/examples. More detailed documentation will follow soon.