Solutions to problems on Rosalind, a platform for learning bioinformatics and programming through problem solving. My solutions are worked in Python 3, using tools including Biopython and NumPy.
Rosalind: http://rosalind.info
My profile: http://rosalind.info/users/anna22/
| PROBLEM | NAME | INFO | SOLUTION |
|---|---|---|---|
| DNA | Counting DNA Nucleotides | Info | Solution |
| RNA | Transcribing DNA into RNA | Info | Solution |
| REVC | Complementing a Strand of DNA | Info | Solution |
| FIB | Rabbits and Recurrence Relations | Info | Solution |
| GC | Computing GC Content | Info | Solution |
| HAMM | Counting Point Mutations | Info | Solution |
| IPRB | Mendel's First Law | Info | Solution |
| PROT | Translating RNA into Protein | Info | Solution |
| SUBS | Finding a Motif in DNA | Info | Solution |
| CONS | Consensus and Profile | Info | Solution |
| FIBD | Mortal Fibonacci Rabbits | Info | Solution |
| GRPH | Overlap Graphs | Info | Solution |
| IEV | Calculating Expected Offspring | Info | Solution |
| LCSM | Finding a Shared Motif | Info | Solution |
| LIA | Independent Alleles | Info | Solution |
| MPRT | Finding a Protein Motif | Info | Solution |
| MRNA | Inferring mRNA from Protein | Info | Solution |
| ORF | Open Reading Frames | Info | Solution |
| PERM | Enumerating Gene Orders | Info | Solution |
| PRTM | Calculating Protein Mass | Info | Solution |
| REVP | Locating Restriction Sites | Info | Solution |
| SPLC | RNA Splicing | Info | Solution |
| LEXF | Enumerating k-mers Lexicographically | Info | Solution |
| LGIS | Longest Increasing Subsequence | Info | Solution |
| LONG | Genome Assembly as Shortest Superstring | Info | Solution |
| PMCH | Perfect Matchings and RNA Secondary Structures | Info | Solution |
| PPER | Partial Permutations | Info | Solution |
| PROB | Introduction to Random Strings | Info | Solution |
| SIGN | Enumerating Oriented Gene Orderings | Info | Solution |
| SSEQ | Finding a Spliced Motif | Info | Solution |
| TRAN | Transitions and Transversions | Info | Solution |
| TREE | Completing a Tree | Info | Solution |
| CAT | Catalan Numbers and RNA Secondary Structures | Info | Solution |
| CORR | Error Correction in Reads | Info | Solution |
| INOD | Counting Phylogenetic Ancestors | Info | Solution |
| KMER | k-Mer Composition | Info | Solution |
| KMP | Speeding Up Motif Finding | Info | Solution |
| LCSQ | Finding a Shared Spliced Motif | Info | Solution |
| LEXV | Ordering Strings of Varying Length Lexicographically | Info | Solution |
| MMCH | Maximum Matchings and RNA Secondary Structures | Info | Solution |
| PDST | Creating a Distance Matrix | Info | Solution |
| RSTR | Matching Random Motifs | Info | Solution |
| SSET | Counting Subsets | Info | Solution |
| ASPC | Introduction to Alternative Splicing | Info | Solution |
| EDIT | Edit Distance | Info | Solution |
| EVAL | Expected Number of Restriction Sites | Info | Solution |
| MOTZ | Motzkin Numbers and RNA Secondary Structures | Info | Solution |
| NWCK | Distances in Trees | Info | Solution |
| SCSP | Interleaving Two Motifs | Info | Solution |
| SETO | Introduction to Set Operations | Info | Solution |
| SPEC | Inferring Protein from Spectrum | Info | Solution |
| TRIE | Introduction to Pattern Matching | Info | Solution |
| CONV | Comparing Spectra with the Spectral Convolution | Info | Solution |
| CTBL | Creating a Character Table | Info | Solution |
| DBRU | Constructing a De Bruijn Graph | Info | Solution |
| EDTA | Edit Distance Alignment | Info | Solution |
| FULL | Inferring Peptide from Full Spectrum | Info | Solution |
| INDC | Independent Segregation of Chromosomes | Info | Solution |
| LREP | Finding the Longest Multiple Repeat | Info | Solution |
| NKEW | Newick Format with Edge Weights | Info | Solution |
| RNAS | Wobble Bonding and RNA Secondary Structures | Info | Solution |
| AFRQ | Counting Disease Carriers | Info | Solution |
| CSTR | Creating a Character Table from Genetic Strings | Info | Solution |
| CUNR | Counting Unrooted Binary Trees | Info | Solution |
| GLOB | Global Alignment with Scoring Matrix | Info | Solution |
| PCOV | Genome Assembly with Perfect Coverage | Info | Solution |
| PRSM | Matching a Spectrum to a Protein | Info | Solution |
| SGRA | Using the Spectrum Graph to Infer Peptides | Info | Solution |
| GASM | Genome Assembly Using Reads | Info | Solution |
| MEND | Inferring Genotype from a Pedigree | Info | Solution |
| PDPL | Creating a Restriction Map | Info | Solution |
| ROOT | Counting Rooted Binary Trees | Info | Solution |
| SEXL | Sex-Linked Inheritance | Info | Solution |
| WFMD | The Wright-Fisher Model of Genetic Drift | Info | Solution |
| INI | Introduction to the Bioinformatics Armory | Info | Solution |
| DBPR | Introduction to Protein Databases | Info | |
| GBK | GenBank Introduction | Info | Solution |
| FRMT | Data Formats | Info | Solution |
| NEED | Pairwise Global Alignment | Info | Solution |
| TFSQ | FASTQ Format Introduction | Info | Solution |
| PHRE | Read Quality Distribution | Info | Solution |
| PTRA | Protein Translation | Info | Solution |
| RVCO | Complementing a Strand of DNA | Info | Solution |
| FILT | Read Filtration by Quality | Info | Solution |
| SUBO | Suboptimal Local Alignment | Info | Solution |
| BPHR | Base Quality Distribution | Info | Solution |
| ORFR | Finding Genes with ORFs | Info | Solution |
| BFIL | Base Filtration by Quality | Info | Solution |