import networkx as nx

import matplotlib.pyplot as plt

goarn_network= nx.Graph()

goarn_network.add_edge("MSF Belgium", "MSF Holland",weight=1)

goarn_network.add_edge("MSF Belgium", "MSF Switzerland",weight=2)

goarn_network.add_edge("MSF Belgium", "MSF France",weight=1)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "MSF Belgium",weight=1)

goarn_network.add_edge("MSF Belgium", "WHO Ethiopia",weight=1)

goarn_network.add_edge("MSF Belgium", "Red Crescent societies",weight=1)

goarn_network.add_edge("MSF Belgium", "WHO HQ",weight=2)

goarn_network.add_edge("MSF Holland", "MSF Switzerland",weight=1)

goarn_network.add_edge("MSF France", "MSF Holland",weight=1)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "MSF Holland",weight=1)

goarn_network.add_edge("MSF Holland", "WHO Ethiopia",weight=1)

goarn_network.add_edge("MSF Holland", "Red Crescent societies",weight=1)

goarn_network.add_edge("MSF Holland", "WHO HQ",weight=1)

goarn_network.add_edge("MSF France", "MSF Switzerland",weight=1)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "MSF Switzerland",weight=1)

goarn_network.add_edge("MSF Switzerland", "WHO Ethiopia",weight=1)

goarn_network.add_edge("MSF Switzerland", "Red Crescent societies",weight=1)

goarn_network.add_edge("MSF Switzerland", "WHO HQ",weight=2)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "MSF France",weight=1)

goarn_network.add_edge("MSF France", "WHO Ethiopia",weight=1)

goarn_network.add_edge("MSF France", "Red Crescent societies",weight=1)

goarn_network.add_edge("MSF France", "WHO HQ",weight=1)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "WHO Ethiopia",weight=1)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "Red Crescent societies",weight=1)

goarn_network.add_edge("Institut National de Recherche Biomedicale", "WHO HQ",weight=1)

goarn_network.add_edge("Red Crescent societies", "WHO Ethiopia",weight=1)

goarn_network.add_edge("WHO Ethiopia", "WHO HQ",weight=1)

goarn_network.add_edge("Red Crescent societies", "WHO HQ",weight=1)

goarn_network.add_edge("Institut Pasteur France", "Ministry of Health Madagascar",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "Ministry of Health Madagascar",weight=1)

goarn_network.add_edge("CDC Atlanta", "Ministry of Health Madagascar",weight=1)

goarn_network.add_edge("Ministry of Health Madagascar", "WHO HQ",weight=1)

goarn_network.add_edge("Ministry of Health Madagascar", "WHO_AFRO",weight=1)

goarn_network.add_edge("Ministry of Health Madagascar", "UNICEF",weight=1)

goarn_network.add_edge("Ministry of Health Madagascar", "World Food Programme",weight=1)

goarn_network.add_edge("Ministry of Health Madagascar", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("Ministry of Health Madagascar", "Reference and Research on Influenza London",weight=1)

goarn_network.add_edge("Institut Pasteur France", "Institut de veille sanitaire",weight=2)

goarn_network.add_edge("CDC Atlanta", "Institut Pasteur France",weight=2)

goarn_network.add_edge("Institut Pasteur France", "WHO HQ",weight=1)

goarn_network.add_edge("Institut Pasteur France", "WHO_AFRO",weight=1)

goarn_network.add_edge("Institut Pasteur France", "UNICEF",weight=1)

goarn_network.add_edge("Institut Pasteur France", "World Food Programme",weight=1)

goarn_network.add_edge("Institut Pasteur France", "WHO Collaborating Centre",weight=2)

goarn_network.add_edge("Institut Pasteur France", "Reference and Research on Influenza London",weight=1)

goarn_network.add_edge("CDC Atlanta", "Institut de veille sanitaire",weight=2)

goarn_network.add_edge("Institut de veille sanitaire", "WHO HQ",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "WHO_AFRO",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "UNICEF",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "World Food Programme",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "Reference and Research on Influenza London",weight=1)

goarn_network.add_edge("CDC Atlanta", "WHO HQ",weight=1)

goarn_network.add_edge("CDC Atlanta", "WHO_AFRO",weight=1)

goarn_network.add_edge("CDC Atlanta", "UNICEF",weight=1)

goarn_network.add_edge("CDC Atlanta", "World Food Programme",weight=1)

goarn_network.add_edge("CDC Atlanta", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("CDC Atlanta", "Reference and Research on Influenza London",weight=1)

goarn_network.add_edge("WHO HQ", "WHO_AFRO",weight=2)

goarn_network.add_edge("UNICEF", "WHO HQ",weight=1)

goarn_network.add_edge("WHO HQ", "World Food Programme",weight=1)

goarn_network.add_edge("WHO Collaborating Centre", "WHO HQ",weight=1)

goarn_network.add_edge("Reference and Research on Influenza London", "WHO HQ",weight=1)

goarn_network.add_edge("UNICEF", "WHO_AFRO",weight=1)

goarn_network.add_edge("WHO_AFRO", "World Food Programme",weight=1)

goarn_network.add_edge("WHO Collaborating Centre", "WHO_AFRO",weight=1)

goarn_network.add_edge("Reference and Research on Influenza London", "WHO_AFRO",weight=1)

goarn_network.add_edge("UNICEF", "World Food Programme",weight=1)

goarn_network.add_edge("UNICEF", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("Reference and Research on Influenza London", "UNICEF",weight=1)

goarn_network.add_edge("WHO Collaborating Centre", "World Food Programme",weight=1)

goarn_network.add_edge("Reference and Research on Influenza London", "World Food Programme",weight=1)

goarn_network.add_edge("Reference and Research on Influenza London", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("Global Influenza Surveillance Network", "Hong Kong National Influenza Center",weight=1)

goarn_network.add_edge("Department of Health in Hong Kong", "Hong Kong National Influenza Center",weight=1)

goarn_network.add_edge("Hong Kong National Influenza Center", "Ministry of Health in Beijing",weight=1)

goarn_network.add_edge("Department of Health in Hong Kong", "Global Influenza Surveillance Network",weight=1)

goarn_network.add_edge("Global Influenza Surveillance Network", "Ministry of Health in Beijing",weight=1)

goarn_network.add_edge("Department of Health in Hong Kong", "Ministry of Health in Beijing",weight=1)

goarn_network.add_edge("CDC Atlanta", "Centre of International Health Australia",weight=1)

goarn_network.add_edge("CDC Atlanta", "Epicentre France",weight=1)

goarn_network.add_edge("CDC Atlanta", "Institut Pasteur Viet Nam",weight=1)

goarn_network.add_edge("CDC Atlanta", "MSF",weight=1)

goarn_network.add_edge("CDC Atlanta", "National Health Service UK",weight=1)

goarn_network.add_edge("CDC Atlanta", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("CDC Atlanta", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("CDC Atlanta", "Central Field Epidemiology Group Smittskyddsinstitutet (SMI)",weight=1)

goarn_network.add_edge("CDC Atlanta", "WHO_WPRO",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "Epicentre France",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "Institut de veille sanitaire",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "Institut Pasteur France",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "Institut Pasteur Viet Nam",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "MSF",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "National Health Service UK",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "Centre of International Health Australia",weight=1)

goarn_network.add_edge("Centre of International Health Australia", "WHO_WPRO",weight=1)

goarn_network.add_edge("Epicentre France", "Institut de veille sanitaire",weight=1)

goarn_network.add_edge("Epicentre France", "Institut Pasteur France",weight=1)

goarn_network.add_edge("Epicentre France", "Institut Pasteur Viet Nam",weight=1)

goarn_network.add_edge("Epicentre France", "MSF",weight=1)

goarn_network.add_edge("Epicentre France", "National Health Service UK",weight=1)

goarn_network.add_edge("Epicentre France", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("Epicentre France", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "Epicentre France",weight=1)

goarn_network.add_edge("Epicentre France", "WHO_WPRO",weight=1)

goarn_network.add_edge("Institut Pasteur Viet Nam", "Institut de veille sanitaire",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "MSF",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "National Health Service UK",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "Institut de veille sanitaire",weight=1)

goarn_network.add_edge("Institut de veille sanitaire", "WHO_WPRO",weight=1)

goarn_network.add_edge("Institut Pasteur France", "Institut Pasteur Viet Nam",weight=1)

goarn_network.add_edge("Institut Pasteur France", "MSF",weight=1)

goarn_network.add_edge("Institut Pasteur France", "National Health Service UK",weight=1)

goarn_network.add_edge("Institut Pasteur France", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("Institut Pasteur France", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "Institut Pasteur France",weight=1)

goarn_network.add_edge("Institut Pasteur France", "WHO_WPRO",weight=1)

goarn_network.add_edge("Institut Pasteur Viet Nam", "MSF",weight=1)

goarn_network.add_edge("Institut Pasteur Viet Nam", "National Health Service UK",weight=1)

goarn_network.add_edge("Institut Pasteur Viet Nam", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("Institut Pasteur Viet Nam", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "Institut Pasteur Viet Nam",weight=1)

goarn_network.add_edge("Institut Pasteur Viet Nam", "WHO_WPRO",weight=1)

goarn_network.add_edge("MSF", "National Health Service UK",weight=1)

goarn_network.add_edge("MSF", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("MSF", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "MSF",weight=1)

goarn_network.add_edge("MSF", "WHO_WPRO",weight=1)

goarn_network.add_edge("National Health Service UK", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("National Health Service UK", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "National Health Service UK",weight=1)

goarn_network.add_edge("National Health Service UK", "WHO_WPRO",weight=1)

goarn_network.add_edge("National Health Service Viet Nam", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "National Health Service Viet Nam",weight=1)

goarn_network.add_edge("National Health Service Viet Nam", "WHO_WPRO",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "Robert Koch Institute Germany",weight=1)

goarn_network.add_edge("Robert Koch Institute Germany", "WHO_WPRO",weight=1)

goarn_network.add_edge("Central Field Epidemiology Group Smittskyddsinstitutet (SMI)", "WHO_WPRO",weight=1)

goarn_network.add_edge("Ministry of Health in Singapore", "WHO",weight=1)

goarn_network.add_edge("Chinese Ministry of Health", "WHO China",weight=1)

goarn_network.add_edge("CDC Taiwan", "WHO",weight=1)

goarn_network.add_edge("Ministry of Health Algeria", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("Institut Pasteur France", "Ministry of Health Algeria",weight=1)

goarn_network.add_edge("Kazakh Scientific Centre for Quarantine and Zoonotic Disease", "Ministry of Health Algeria",weight=1)

goarn_network.add_edge("Kazakh Scientific Centre for Quarantine and Zoonotic Disease", "WHO Collaborating Centre",weight=1)

goarn_network.add_edge("Institut Pasteur France", "Kazakh Scientific Centre for Quarantine and Zoonotic Disease",weight=1)

goarn_network.add_edge("IMTSSA", "WHO",weight=1)

goarn_network.add_edge("CDC Atlanta", "WHO",weight=1)

goarn_network.add_edge("Public Health Agency of Canada", "WHO",weight=1)

goarn_network.add_edge("EPIET", "WHO",weight=1)

goarn_network.add_edge("CDC Atlanta", "IMTSSA",weight=1)

goarn_network.add_edge("IMTSSA", "Public Health Agency of Canada",weight=1)

goarn_network.add_edge("EPIET", "IMTSSA",weight=1)

goarn_network.add_edge("CDC Atlanta", "Public Health Agency of Canada",weight=1)

goarn_network.add_edge("CDC Atlanta", "EPIET",weight=1)

goarn_network.add_edge("EPIET", "Public Health Agency of Canada",weight=1)

goarn_network.add_edge("WHO DRC", "WHO HQ",weight=1)

goarn_network.add_edge("Ministry of Health DRC", "WHO HQ",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "WHO HQ",weight=1)

goarn_network.add_edge("Medair", "WHO HQ",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "WHO HQ",weight=1)

goarn_network.add_edge("WHO DRC", "WHO_AFRO",weight=1)

goarn_network.add_edge("Ministry of Health DRC", "WHO DRC",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "WHO DRC",weight=1)

goarn_network.add_edge("MSF Belgium", "WHO DRC",weight=1)

goarn_network.add_edge("MSF Switzerland", "WHO DRC",weight=1)

goarn_network.add_edge("Medair", "WHO DRC",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "WHO DRC",weight=1)

goarn_network.add_edge("Ministry of Health DRC", "WHO_AFRO",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "WHO_AFRO",weight=1)

goarn_network.add_edge("MSF Belgium", "WHO_AFRO",weight=1)

goarn_network.add_edge("MSF Switzerland", "WHO_AFRO",weight=1)

goarn_network.add_edge("Medair", "WHO_AFRO",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "WHO_AFRO",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "Ministry of Health DRC",weight=1)

goarn_network.add_edge("MSF Belgium", "Ministry of Health DRC",weight=1)

goarn_network.add_edge("MSF Switzerland", "Ministry of Health DRC",weight=1)

goarn_network.add_edge("Medair", "Ministry of Health DRC",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "Ministry of Health DRC",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "MSF Belgium",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "MSF Switzerland",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "Medair",weight=1)

goarn_network.add_edge("Institut Pasteur Madagascar", "Institut de la Recherche Biomedicale",weight=1)

goarn_network.add_edge("MSF Belgium", "Medair",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "MSF Belgium",weight=1)

goarn_network.add_edge("MSF Switzerland", "Medair",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "MSF Switzerland",weight=1)

goarn_network.add_edge("Institut de la Recherche Biomedicale", "Medair",weight=1)

#import csv

#with open("/Users/grizzlemuff/Documents/SI608/GOARN/airborne.csv", 'wb') as csvfile:

# spamwriter = csv.writer(csvfile)

# spamwriter.writerow('D')

# centrality= nx.degree_centrality(goarn_network)

# for each in centrality.items():

# print 'Degree Centrality: ', each[0], each[1]

# print each

# spamwriter.writerow([each[0], each[1]])

#

# spamwriter.writerow('C')

# close=nx.closeness_centrality(goarn_network)

# for each in close.items():

# print 'Closeness Centrality: ', each[0], '\t', each[1]

# spamwriter.writerow([each[0], each[1]])

#

# spamwriter.writerow('B')

# btwn=nx.betweenness_centrality(goarn_network, weight='weight')

# for each in btwn.items():

# print 'Betweeness Centrality: ', each[0], each[1]

# spamwriter.writerow([each[0], each[1]])

#

# avg_clust= nx.average_clustering(goarn_network)

# print 'Average Clustering: ', avg_clust

#

#

#

#

# clustering = nx.clustering(goarn_network)

#

# spamwriter.writerow('L')

# for each in clustering.items():

# print 'Clustering Coefficient per Node: ', each[0], each[1]

# spamwriter.writerow([each[0], each[1]])

# csvfile.close()

#

#

#nx.draw_spring(goarn_network, k=0.95,iterations=20, font_size=10)

#plt.show()

##Histogram of degree distribution

#d = nx.degree(goarn_network)

#plt.hist(d.values())

#plt.show()

def most_important(G):

return Gt

Gt = most_important(goarn_network) # trimming

from pylab import show

# create the layout

pos = nx.spring_layout(goarn_network)

# draw the nodes and the edges (all)

nx.draw_networkx_nodes(goarn_network,pos,node_color='b',alpha=0.2,node_size=8)

nx.draw_networkx_edges(goarn_network,pos,alpha=0.1)

# draw the most important nodes with a different style

nx.draw_networkx_nodes(Gt,pos,node_color='r',alpha=0.4,node_size=254)

# also the labels this time

nx.draw_networkx_labels(Gt,pos,font_size=12,font_color='b')

show()

from networkx.algorithms import bipartite

print bipartite.is_bipartite(goarn_network)

#from networkx import find_cliques

#cliques = list(find_cliques(goarn_network))

#bigg= max(cliques, key=lambda l: len(l))

#print bigg

#print nx.graph_number_of_cliques(goarn_network, cliques)

H=nx.connected_component_subgraphs(goarn_network)[0]

print(nx.average_shortest_path_length(H))

print len(goarn_network.nodes())