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DESCRIPTION: ========================================================================================= SAP makes statistical assingment of an unknown DNA sequence to taxa represented by sequences in GenBank. Each assignment is associated with a posterior probility that serve as a confidence in the assignment. REQUIREMENTS: ========================================================================================= You need the Python interpreter (version 2.4 or newer) to run SAP. If you already have Python installed you can check the version by typing python in your terminal. Python is easlily downloaded and installed from: https://store.continuum.io/cshop/anaconda/. You also need to have gcc and g++ or clang or clang++ installed. This is part the the default installation on Macintosh and most Linux distributions. If you are on a Unix/Linux system that does not include g++ by default. You need to install this yourself like this: sudo apt-get install g++ And then make sure that gcc and g++ are the same versions like this: gcc --version g++ --version INSTALATION: ========================================================================================= If you have administrator privileges on your machine you type: python setup.py install If you do not have administrator privileges or just want to install in some non-default directory you make or have a directory /lib/python2.4/site-packages (if you use python 2.4) that is in your python path. Then you just type: python setup.py install --prefix=<some_dir>
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