pfPPQ

PPQ IC50s with JP

Looking at specific targets that could be associated with PPQ resistance. Using the WR1877 whole-genome sequencing data we've generated. Because we might be interested in both SNPs and indels, we'll use GATK's Haplotype Caller.

Name		Name	Last commit message	Last commit date
Latest commit History 39 Commits
KM_Curves		KM_Curves
cp-kh		cp-kh
dadi		dadi
fst_figure		fst_figure
heatmap		heatmap
mdrCN		mdrCN
menard_crt_snps		menard_crt_snps
pca_vs_ic50		pca_vs_ic50
pf_phylogeny_work		pf_phylogeny_work
snp_counter		snp_counter
variants		variants
.RData		.RData
.Rhistory		.Rhistory
README.md		README.md
backbone.txt		backbone.txt
four_groups_v2.txt		four_groups_v2.txt
groups_v_backbone.txt		groups_v_backbone.txt
our_goods_5x@60%.list		our_goods_5x@60%.list
targetCaller.sh		targetCaller.sh
targets.intervals		targets.intervals

christianparobek/pfPPQ

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