Sequence clustering with interpolated Markov models
License
davek44/Scimm
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
Scimm is an unsupervised method to cluster sequences using interpolated Markov models. Scimm is initialized by clustering with LikelyBin and my version of CompostBin. PhyScimm is a partially supervised method that uses Phymm to initialize Scimm. Reference: Kelley, DR and Salzberg, SL. Clustering metagenomic sequences with interpolated Markov models. BMC Bioinformatics 11:154 2010. Website (w/ manual): http://www.cbcb.umd.edu/software/scimm
About
Sequence clustering with interpolated Markov models
Resources
License
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published