pyMotif

Python wrappers in scikit-learn style for popular and experimental sequence motif algorithms.

Name		Name	Last commit message	Last commit date
Latest commit History 111 Commits
.gitignore		.gitignore
DREME_example.ipynb		DREME_example.ipynb
Experiment_NumOfMotives.ipynb		Experiment_NumOfMotives.ipynb
Experiment_SequenceLength.ipynb		Experiment_SequenceLength.ipynb
Experiment_Time.ipynb		Experiment_Time.ipynb
Experiment_noise.ipynb		Experiment_noise.ipynb
LICENSE		LICENSE
Motif extraction comparison - EDeN, MEME, SMoD.ipynb		Motif extraction comparison - EDeN, MEME, SMoD.ipynb
Parameter Optimization.ipynb		Parameter Optimization.ipynb
Performance Comparison.ipynb		Performance Comparison.ipynb
README.md		README.md
Report.pdf		Report.pdf
Score Signal Visuals for SMoD.ipynb		Score Signal Visuals for SMoD.ipynb
Score_Comparison_SMoD_vs_Wrapper.ipynb		Score_Comparison_SMoD_vs_Wrapper.ipynb
conda-spec-file.txt		conda-spec-file.txt
dataset_generator.py		dataset_generator.py
dreme_wrapper.py		dreme_wrapper.py
eden_example.ipynb		eden_example.ipynb
eden_wrapper.py		eden_wrapper.py
glam2_example.ipynb		glam2_example.ipynb
glam2_wrapper.py		glam2_wrapper.py
meme_example.ipynb		meme_example.ipynb
meme_wrapper.py		meme_wrapper.py
new dataset.ipynb		new dataset.ipynb
requirements.txt		requirements.txt
script_optimization.py		script_optimization.py
seq18.fa		seq18.fa
seq9.fa		seq9.fa
seqs.fa		seqs.fa
smod_example.ipynb		smod_example.ipynb
smod_wrapper.py		smod_wrapper.py
utilities.py		utilities.py
utilities_examples.ipynb		utilities_examples.ipynb

fabriziocosta/pyMotif