A mock system for testing MPI implementations

Loads .csv into pandas and dumps to sqlite table in common database

Exposes API for processing ingested tables

Exposes API to de-identify a table

MPI NoSQL demos require a configured MongoDB instance.

Setting up MongoDB

1. Start MongoDB container

podman run -d --name mongo_db -p 27017:27017 -e MONGO_INITDB_ROOT_USERNAME=mongoadmin -e MONGO_INITDB_ROOT_PASSWORD=dbpassword mongo

2. Enter the container and create a collection

podman exec -it mongo_db bash

3. Create application Role and DB (or skip and use root stuff for testing)

XXXX

Tests written with pytest

Run all tests with:

pytest

Update environment.yml with

conda env export > environment.yml

• Check that pip dependencies written in.

You can create a pipenv shell from environment.yml via:

1. Steps (probably want a requirements.txt or something)