analysis_SHOGUN

Analysis scripts and code for reproducing the analysis for the SHOGUN paper

Installation

To reproduce the figures for the paper, you must first recreate the anaconda environment.

conda env create -f environment.yml

Name		Name	Last commit message	Last commit date
Latest commit History 196 Commits
analysis_16S_v_shotgun		analysis_16S_v_shotgun
benchmarks		benchmarks
data		data
figures		figures
final_figures		final_figures
notebooks		notebooks
scripts		scripts
tools		tools
workflows/alignment		workflows/alignment
.gitignore		.gitignore
LICENSE.md		LICENSE.md
README.md		README.md
Snakefile		Snakefile
config.yaml		config.yaml
environment.yml		environment.yml