Dynamic optimization-based FBA in python

Very rough code to perform various dynamic optimization based strategies for metabolic modeling. Makes heavy use of the casadi package.

Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
.gitignore		.gitignore
BaseCollocation.py		BaseCollocation.py
Collocation.py		Collocation.py
DOAcollocation.py		DOAcollocation.py
EFMcollocation.py		EFMcollocation.py
ParetoCollocation.py		ParetoCollocation.py
README.md		README.md
SingleStageCollocation.py		SingleStageCollocation.py
VariableHandler.py		VariableHandler.py
__init__.py		__init__.py
alpha_sweep_test.py		alpha_sweep_test.py
old_collocation.py		old_collocation.py
xylose_example.py		xylose_example.py

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.gitignore

.gitignore

BaseCollocation.py

BaseCollocation.py

Collocation.py

Collocation.py

DOAcollocation.py

DOAcollocation.py

EFMcollocation.py

EFMcollocation.py

ParetoCollocation.py

ParetoCollocation.py

README.md

README.md

SingleStageCollocation.py

SingleStageCollocation.py

VariableHandler.py

VariableHandler.py

init.py

init.py

alpha_sweep_test.py

alpha_sweep_test.py

old_collocation.py

old_collocation.py

xylose_example.py

xylose_example.py

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Dynamic optimization-based FBA in python

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Dynamic optimization-based FBA in python

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