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Liver Medical Diagnosis Support

Tested:

+PACS server - Orthanc

+Operating system - Win10

+Python version: 3.7 (don't try on Python 2.x)

Required programs

  • Python 3.7 (include pip and virtualenv) link
  • Anaconda (conda in system PATH) link
  • Configured PACS Orthanc Server link
  • Postgresql Server with created empty database link

Prepare virtual environment

First step to run application is create new python virtual environment run before_start.bat or type in command line:

python -m venv livmds_env
.\livmds\Scripts\activate.bat    
pip install -r requirements.txt  

Prepare anaconda env

Get H-DenseUNet from here Find anaconda envs directory and move there H-DenseUNet from zip

Get model file for nn segment feature

Get hd5 file from here Put it to LivMDS\res\HDense-UNet-master_v1\model

Running app

To run app you should run you command prompt from app directory and then type or run LivMDS_start.bat:

python LiverMDS.py.py

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