import cPickle

import sp_tools

from time import clock

import sys

import datetime

#usage: python ./print_and_pickle_all_ncbi_paper_info.py > AllNCBIPaperInfo.log 2>&1

#load up the pre-pickled data

papersExp_handle = open('Uniprot-Bias/goa_exp_papers.pik', 'rb')

papersExp_dict = cPickle.load(papersExp_handle)

papers_protsExp_handle = open('Uniprot-Bias/goa_exp_papers_prots.pik', 'rb')

papers_protsExp_dict = cPickle.load(papers_protsExp_handle)

print "all_NCBI_paper_info_dict: get all the pubmed info we want"

print clock()

sys.stdout.flush()

ncbi_paper_dict = sp_tools.all_NCBI_paper_info_dict(papersExp_dict, papers_protsExp_dict, outpath=None,delim="\t", top=None)

print "cPikleDump: save that ncbi_paper_dict for later"

print clock()

sys.stdout.flush()

sp_tools.cPickleDump(ncbi_paper_dict, "Uniprot-Bias/ncbi_paper_info.pik")

print "Done!"

print clock()

sys.stdout.flush()