missense-variants-analysis (sequence and structural properties)

These scripts were used in the analysis/classification of missense variants in X-linked genes, starting with CACNA1F gene. The variant properties from a functionaly benign dataset and pathogenic dataset were identifed and used in the classification/prediction of variants. Each script was used to extract a piece of information

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
PythonForBiology		PythonForBiology
README.md		README.md
ROC_PRC_curves.py		ROC_PRC_curves.py
Reference_residue_size_change.py		Reference_residue_size_change.py
angleCalculator_lowerUpperDomains.py		angleCalculator_lowerUpperDomains.py
auc_comparison.py		auc_comparison.py
calculate_conservation_scores.py		calculate_conservation_scores.py
charge_gain_loss.py		charge_gain_loss.py
consurf.py		consurf.py
dbNSFP_predictionAUCs.py		dbNSFP_predictionAUCs.py
dbNSFP_query_using_coordinates.py		dbNSFP_query_using_coordinates.py
disordered_region_prediction.py		disordered_region_prediction.py
domain_separator_for_pymol_input.py		domain_separator_for_pymol_input.py
hydrophobicity_change.py		hydrophobicity_change.py
mutation_size_generator.py		mutation_size_generator.py
naccess_extraction.py		naccess_extraction.py
probe_scores.py		probe_scores.py
proteinStability-interaction_prediction.py		proteinStability-interaction_prediction.py
pymol_visualisation.py		pymol_visualisation.py
theshold_validation_through_mcc.py		theshold_validation_through_mcc.py
threshold_optimization_through_mcc.py		threshold_optimization_through_mcc.py
variantValidator.py		variantValidator.py
volume_change.py		volume_change.py

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missense-variants-analysis (sequence and structural properties)

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