obesity

obesity challenge

Require

Python 2.7

Tensorflow 1.4.0

Main Entry

CNN_words_entities.py

CNN Model with word embeddings and entity embeddings

cnn_2inputs.py

Reproducing results

Download MIMIC III word vector file and uncompress it in /data.

https://drive.google.com/file/d/1Te00ySSjyifNb3rv3bsYRRIKBA_J5mPt/view?usp=sharing
Execute this command:

python CNN_words_entities.py

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
checkpoints		checkpoints
data		data
helper		helper
images		images
output		output
perl_classifier		perl_classifier
CNN_words_entities.py		CNN_words_entities.py
CUIs_CNN.py		CUIs_CNN.py
CUIs_rnn_atten.py		CUIs_rnn_atten.py
CUIs_text.py		CUIs_text.py
README.md		README.md
bow.py		bow.py
bow_tfidf_linear_svm.py		bow_tfidf_linear_svm.py
cnn_2inputs.py		cnn_2inputs.py
cnn_2inputs.pyc		cnn_2inputs.pyc
cnn_model.py		cnn_model.py
cnn_model.pyc		cnn_model.pyc
cnn_plus_remove.py		cnn_plus_remove.py
cnn_plus_short.py		cnn_plus_short.py
combine2perlxml.py		combine2perlxml.py
compare2xml.py		compare2xml.py
doc2vec.py		doc2vec.py
doc2vec_removeQN.py		doc2vec_removeQN.py
filter_sentences_by_rules.py		filter_sentences_by_rules.py
perl_log_features.py		perl_log_features.py
perl_log_useful.py		perl_log_useful.py
plus_features_as_short_text.py		plus_features_as_short_text.py
plus_textual_removeQN.py		plus_textual_removeQN.py
predict.py		predict.py
prepare_data_for_perl.py		prepare_data_for_perl.py
records.py		records.py
requirements.txt		requirements.txt
rnn_atten.py		rnn_atten.py
rnn_atten.pyc		rnn_atten.pyc
rnn_model.py		rnn_model.py
rnn_model.pyc		rnn_model.pyc
rnn_model_pre_emb.py		rnn_model_pre_emb.py
rnn_model_pre_emb.pyc		rnn_model_pre_emb.pyc
rnn_plus_remove.py		rnn_plus_remove.py
rnn_plus_short.py		rnn_plus_short.py
rnn_remove.py		rnn_remove.py
run_cnn.py		run_cnn.py
run_cnn.pyc		run_cnn.pyc
run_cnn_combined.py		run_cnn_combined.py
run_cnn_combined.pyc		run_cnn_combined.pyc
run_cnn_obesity.py		run_cnn_obesity.py
run_cnn_remove.py		run_cnn_remove.py
run_rnn.py		run_rnn.py
run_rnn.pyc		run_rnn.pyc
run_rnn_obesity.py		run_rnn_obesity.py
text_cnn.py		text_cnn.py

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obesity

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Main Entry

CNN Model with word embeddings and entity embeddings

Reproducing results

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