comparativeRNAseq

This series of scripts takes RNAseq data aligned with STAR and extracts the reads to be quantified against the Gencode mouse transcriptome with the new program Kallisto.

Designed with the 1505 release of the mouse genomes project in mind.

Name		Name	Last commit message	Last commit date
Latest commit History 13 Commits
bin		bin
sonLib @ db59f3a		sonLib @ db59f3a
src		src
.gitignore		.gitignore
.gitmodules		.gitmodules
README.md		README.md
evaluate_de.py		evaluate_de.py
evaluate_de_htseq.py		evaluate_de_htseq.py
evaluate_interesting_de_missing_reads.py		evaluate_interesting_de_missing_reads.py
find_perfect_orthologs.py		find_perfect_orthologs.py
generate_unique_paired_bams.py		generate_unique_paired_bams.py
make_plots.py		make_plots.py
merge_wiggles.py		merge_wiggles.py
mouse_analysis_notes.py		mouse_analysis_notes.py
mouse_plots.py		mouse_plots.py
run_DEseq.R		run_DEseq.R
run_htseq_deseq.R		run_htseq_deseq.R
run_pairwise_v4.sh		run_pairwise_v4.sh

ucsc-mus-strain-cactus/comparativeRNAseq

Folders and files

Latest commit

History

Repository files navigation

comparativeRNAseq

About

Resources

Stars

Watchers

Forks

Languages