Install dependencies:
git clone https://github.com/woutdenolf/spectrocrunch
. spectrocrunch/tools/linux-install-deps.sh [-u]Install from PyPi:
pip install [--user] spectrocrunchInstall from source:
git clone https://github.com/woutdenolf/spectrocrunch
cd spectrocrunch
pip install [--user] .Test:
# Test source:
python setup.py test
# Test installation:
python -m spectrocrunch.tests.test_all
# Test with options:
python -m unittest -v spectrocrunch.tests.test_all.test_suite
pytest spectrocrunch
nose2 -v spectrocrunch
# Individual tests
python -m unittest spectrocrunch.align.tests.test_align.test_align.test_centroid
pytest spectrocrunch/align/tests/test_align.py::test_align::test_centroidDocumentation:
Main development website: https://github.com/woutdenolf/spectrocrunch
Distribution website: https://pypi.python.org/pypi/spectrocrunch
Guidelines for contributors and project managers can be found in the developers guide.
git clone https://github.com/woutdenolf/spectrocrunch
cd spectrocrunchTo import modules from a package without installing the package, add the directory of the package to the PYTHONPATH environment variable or add this to the top of your script
import sys
sys.path.insert(1,'.../spectrocrunch')Import as follows:
from spectrocrunch.align.alignElastix import alignElastix as align