Name		Name	Last commit message	Last commit date
Latest commit History 149 Commits
.Trash-1000		.Trash-1000
mlproof		mlproof
new_slurms		new_slurms
paper		paper
rectify_slurms		rectify_slurms
rgba_slurms		rgba_slurms
slurms		slurms
._.TemporaryItems		._.TemporaryItems
._gen_patches_rgba.py		._gen_patches_rgba.py
._generate_patches.py		._generate_patches.py
._stats.py		._stats.py
._store_patches_rgba.py		._store_patches_rgba.py
.gitignore		.gitignore
ALLSTATS.ipynb		ALLSTATS.ipynb
CNN_STATS.ipynb		CNN_STATS.ipynb
CNN_STATS10.ipynb		CNN_STATS10.ipynb
CNN_STATS11.ipynb		CNN_STATS11.ipynb
CNN_STATS12.ipynb		CNN_STATS12.ipynb
CNN_STATS13.ipynb		CNN_STATS13.ipynb
CNN_STATS14.ipynb		CNN_STATS14.ipynb
CNN_STATS2.ipynb		CNN_STATS2.ipynb
CNN_STATS3.ipynb		CNN_STATS3.ipynb
CNN_STATS4.ipynb		CNN_STATS4.ipynb
CNN_STATS5.ipynb		CNN_STATS5.ipynb
CNN_STATS6.ipynb		CNN_STATS6.ipynb
CNN_STATS7.ipynb		CNN_STATS7.ipynb
CNN_STATS8.ipynb		CNN_STATS8.ipynb
CNN_STATS9.ipynb		CNN_STATS9.ipynb
CUSTOMSTATS.ipynb		CUSTOMSTATS.ipynb
CUSTOMSTATS_DO-Copy1.ipynb		CUSTOMSTATS_DO-Copy1.ipynb
CUSTOMSTATS_DO.ipynb		CUSTOMSTATS_DO.ipynb
DOJO_STATS.ipynb		DOJO_STATS.ipynb
Load_CNN.ipynb		Load_CNN.ipynb
MERGEERROR.ipynb		MERGEERROR.ipynb
MergeNet3_image_prob_mergedarray_borderoverlap.ipynb		MergeNet3_image_prob_mergedarray_borderoverlap.ipynb
MergeNetDropout_image_prob_mergedarray_largerborderoverlap_LARGE.ipynb		MergeNetDropout_image_prob_mergedarray_largerborderoverlap_LARGE.ipynb
MergeNetThreeLegDropout_image_prob_mergedarray_LARGE.ipynb		MergeNetThreeLegDropout_image_prob_mergedarray_LARGE.ipynb
MergeNet_image_prob_mergedarray_borderoverlap.ipynb		MergeNet_image_prob_mergedarray_borderoverlap.ipynb
MergeNet_image_prob_mergedarray_borderoverlap_LARGE.ipynb		MergeNet_image_prob_mergedarray_borderoverlap_LARGE.ipynb
MergeNet_image_prob_mergedarray_largerborderoverlap.ipynb		MergeNet_image_prob_mergedarray_largerborderoverlap.ipynb
MergeNet_image_prob_mergedarray_largerborderoverlap_LARGE.ipynb		MergeNet_image_prob_mergedarray_largerborderoverlap_LARGE.ipynb
README.md		README.md
RGBA_concat.ipynb		RGBA_concat.ipynb
RGBA_image_prob_mergedarray_borderoverlap.ipynb		RGBA_image_prob_mergedarray_borderoverlap.ipynb
RGBA_image_prob_mergedarray_largerborderoverlap.ipynb		RGBA_image_prob_mergedarray_largerborderoverlap.ipynb
RGBA_image_prob_mergedarray_largerborderoverlap_LARGE.ipynb		RGBA_image_prob_mergedarray_largerborderoverlap_LARGE.ipynb
RGBA_patch_debug.ipynb		RGBA_patch_debug.ipynb
RGB_image_prob_mergedarray.ipynb		RGB_image_prob_mergedarray.ipynb
SEG_STATS.ipynb		SEG_STATS.ipynb
Untitled.ipynb		Untitled.ipynb
gen_patches_rgb.py		gen_patches_rgb.py
gen_patches_rgb_border.py		gen_patches_rgb_border.py
gen_patches_rgba.py		gen_patches_rgba.py
gen_patches_rgba_border.py		gen_patches_rgba_border.py
gen_patches_rgba_large_border.py		gen_patches_rgba_large_border.py
gen_patches_rgba_split.py		gen_patches_rgba_split.py
generate_patches.ipynb		generate_patches.ipynb
generate_patches.py		generate_patches.py
generate_patches_RGB.ipynb		generate_patches_RGB.ipynb
generate_patches_RGBA.ipynb		generate_patches_RGBA.ipynb
generate_patches_small_RGBA.ipynb		generate_patches_small_RGBA.ipynb
new_patch_generation_tests.ipynb		new_patch_generation_tests.ipynb
pg_rgba_iplb.py		pg_rgba_iplb.py
pg_rgba_ipmb.py		pg_rgba_ipmb.py
pg_rgba_ipmlb.py		pg_rgba_ipmlb.py
requirements.txt		requirements.txt
run_cnn.py		run_cnn.py
shuffle_patches_rgba.py		shuffle_patches_rgba.py
stats.py		stats.py
store_patches_rgba.py		store_patches_rgba.py
zoomed_image.ipynb		zoomed_image.ipynb

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mlproof

New code for machine learning-based proofreading.

Installation

sudo apt-get install libfreetype6-dev
sudo apt-get install libhdf5-dev

sudo pip install virtualenv
virtualenv nolearn
source nolearn/bin/activate

pip install -r https://raw.githubusercontent.com/dnouri/nolearn/master/requirements.txt
pip install git+https://github.com/dnouri/nolearn.git@master#egg=nolearn==0.7.git

pip install -r requirements.txt

xcode2010/mlproof

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