cf_pipeline

this is acobian's fork of cf_pipeline

Name		Name	Last commit message	Last commit date
Latest commit History 82 Commits
OUTPUT_figures		OUTPUT_figures
OUTPUT_methods		OUTPUT_methods
OUTPUT_tables		OUTPUT_tables
P00_rawreads		P00_rawreads
P015_hisat_output		P015_hisat_output
P016_hisat_nohit		P016_hisat_nohit
P017_hisat_univec_output		P017_hisat_univec_output
P018_hisat_univec_nohit		P018_hisat_univec_nohit
P019_hisat_viral_refseq		P019_hisat_viral_refseq
P01_prinseq_output		P01_prinseq_output
P020_viral_hits		P020_viral_hits
P021_table_viral_hits		P021_table_viral_hits
P022_hg_counts		P022_hg_counts
P023_super_focus		P023_super_focus
P02_pear_output		P02_pear_output
P03_qfpassed_fasta		P03_qfpassed_fasta
P03_qfpassed_fastq		P03_qfpassed_fastq
P04_map_HG		P04_map_HG
P04_noHG		P04_noHG
P05_map_rRNA		P05_map_rRNA
P05_noHG_norRNA		P05_noHG_norRNA
P06_kaiju		P06_kaiju
P07_map_viral_refseq		P07_map_viral_refseq
P08_map_virulence_factors		P08_map_virulence_factors
P09_antibiotic_resistance		P09_antibiotic_resistance
P10_super_focus		P10_super_focus
P11_frp_topbacteria		P11_frp_topbacteria
P11_map_topbacteria		P11_map_topbacteria
P12_spades_cross		P12_spades_cross
P13_spades_map		P13_spades_map
bin		bin
scripts		scripts
steps		steps
.gitignore		.gitignore
README.md		README.md
downdb.sh		downdb.sh
frap_normalization.pl		frap_normalization.pl
make_ids.pl		make_ids.pl
make_makefiles.pl		make_makefiles.pl
old_makefile		old_makefile
prinseq-lite.pl		prinseq-lite.pl

yinacobian/cf_pipeline