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ngs

NGS Language Bindings

NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. The API itself is independent from any particular back-end implementation, and supports use of multiple back-ends simultaneously. It also provides a library for building new back-end "engines". The engine for accessing SRA data is contained within the sister repository ncbi-vdb.

The API is currently expressed in C++, Java and Python languages. The design makes it possible to maintain a high degree of similarity between the code in one language and code in another - especially between C++ and Java.

Documentation

Further documentation is available on the wiki.

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  • C++ 46.8%
  • Perl 20.9%
  • Java 16.7%
  • Python 6.6%
  • C 5.9%
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