def test_seqfile_format_other(self): seq_file = open(self.other_filename, 'w') seq_file.write(str(self.seq)) seq_file.close() format, name = seqfile_ops.seqfile_format(self.other_filename) self.assertEqual(format, 'unidentified')
def test_seqfile_format_gbk(self): count = seqfile_ops.write_genbank(self.gbk_filename, self.record) self.assertIs(count, 1) format, name = seqfile_ops.seqfile_format(self.gbk_filename) self.assertEqual(format, 'genbank')
def test_seqfile_format_seq(self): seq_file = open(self.seq_filename, 'w') seq_file.write(str(self.seq)) seq_file.close() format, name = seqfile_ops.seqfile_format(self.seq_filename) self.assertEqual(format, 'seq')
def test_seqfile_format_fas(self): count = seqfile_ops.write_fasta(self.fas_filename, self.record) self.assertIs(count, 1) format, name = seqfile_ops.seqfile_format(self.fas_filename) self.assertEqual(format, 'fasta')