Python getCellMLStringの例

コード例 #1

ファイル: tellurium.py プロジェクト: ShaikAsifullah/distributed-tellurium

def sbmlToCellML(sbml):
    """ Convert SBML to CellML string.

    :param sbml: SBML string or file
    :type sbml: str | file
    :return: CellML
    :rtype: str
    """
    if os.path.isfile(sbml):
        code = antimony.loadSBMLFile(sbml)
    else:
        code = antimony.loadSBMLString(sbml)
    _checkAntimonyReturnCode(code)
    return antimony.getCellMLString(None)

コード例 #2

ファイル: tellurium.py プロジェクト: yarden/tellurium

def sbmlToCellML(sbml):
    """ Convert SBML to CellML string.

    :param sbml: SBML string or file
    :type sbml: str | file
    :return: CellML
    :rtype: str
    """
    if os.path.isfile(sbml):
        code = antimony.loadSBMLFile(sbml)
    else:
        code = antimony.loadSBMLString(sbml)
    _checkAntimonyReturnCode(code)
    return antimony.getCellMLString(None)

コード例 #3

ファイル: tellurium.py プロジェクト: ShaikAsifullah/distributed-tellurium

def antimonyToCellML(ant):
    """ Convert Antimony to CellML string.

    :param ant: Antimony string or file
    :type ant: str | file
    :return: CellML
    :rtype: str
    """
    if os.path.isfile(ant):
        code = antimony.loadAntimonyFile(ant)
    else:
        code = antimony.loadAntimonyString(ant)
    _checkAntimonyReturnCode(code)
    mid = antimony.getMainModuleName()
    return antimony.getCellMLString(mid)

コード例 #4

ファイル: tellurium.py プロジェクト: yarden/tellurium

def antimonyToCellML(ant):
    """ Convert Antimony to CellML string.

    :param ant: Antimony string or file
    :type ant: str | file
    :return: CellML
    :rtype: str
    """
    if os.path.isfile(ant):
        code = antimony.loadAntimonyFile(ant)
    else:
        code = antimony.loadAntimonyString(ant)
    _checkAntimonyReturnCode(code)
    mid = antimony.getMainModuleName()
    return antimony.getCellMLString(mid)

コード例 #5

ファイル: tellurium_export.py プロジェクト: kirichoi/tellurium

# file for export
f_matlab = tempfile.NamedTemporaryFile(suffix=".m")

# export current model state
r.exportToMatlab(f_matlab.name)

# to export the initial state when the model was loaded
# set the current argument to False
r.exportToMatlab(f_matlab.name, current=False)

# The string representations of the current model are available via
str_matlab = r.getCurrentMatlab()

# and of the initial state when the model was loaded via
str_matlab = r.getMatlab()
print(str_matlab)


# In[5]:

import antimony
antimony.loadAntimonyString('''S1 -> S2; k1*S1; k1 = 0.1; S1 = 10''')
ant_str = antimony.getCellMLString(antimony.getMainModuleName())
print(ant_str)


# In[6]:

コード例 #6

ファイル: tellurium_export.py プロジェクト: vivekruhela/tellurium

import tellurium as te
import tempfile

# load model
r = te.loada('S1 -> S2; k1*S1; k1 = 0.1; S1 = 10')
# file for export
f_matlab = tempfile.NamedTemporaryFile(suffix=".m")

# export current model state
r.exportToMatlab(f_matlab.name)

# to export the initial state when the model was loaded
# set the current argument to False
r.exportToMatlab(f_matlab.name, current=False)

# The string representations of the current model are available via
str_matlab = r.getCurrentMatlab()

# and of the initial state when the model was loaded via
str_matlab = r.getMatlab()
print(str_matlab)

# In[5]:

import antimony
antimony.loadAntimonyString('''S1 -> S2; k1*S1; k1 = 0.1; S1 = 10''')
ant_str = antimony.getCellMLString(antimony.getMainModuleName())
print(ant_str)

# In[6]: