def test_build_read_groups_skipsHeaderLines(self):
read1 = MockSplitRead("key1", "L")
read2 = MockSplitRead("key1", "L")
split_read_builder = MockSplitReadBuilder({'1':read1, '2':read2}, ["@h1", "@h2"])
reader = ["@h1", "@h2", "1","2"]
common_keys = set()
pairs = _build_read_groups(common_keys, split_read_builder, reader, MockLogger())
self.assertEqual(1, len(pairs))
def test_build_read_groups_twoDistinctReads(self):
read1 = MockSplitRead("key1", "L")
read2 = MockSplitRead("key2", "R")
split_read_builder = MockSplitReadBuilder({'read1':read1, 'read2':read2})
reader = ["read1", "read2"]
common_keys = set(["key1","key2"])
pairs = _build_read_groups(common_keys, split_read_builder, reader, MockLogger())
self.assertEqual(2, len(pairs))
self.assertEqual(([read1],[]), pairs["key1"])
self.assertEqual(([],[read2]), pairs["key2"])
