def set_configuration_file(configuration_file):
"""Set configuration file and reset all configuration options.
Arguments:
configuration_file -- name of the configuration file, basestring, or
'None' (in which case nothing happens)
"""
import config
if configuration_file is not None:
for o in config.options():
o.reset()
config.config_file = configuration_file
config.read_configuration_file(configuration_file)
def set_configuration_file(configuration_file):
"""Set configuration file and reset all configuration options.
Arguments:
configuration_file -- name of the configuration file, basestring, or
'None' (in which case nothing happens)
"""
import config
if configuration_file is not None:
for o in config.options():
o.reset()
config.config_file = configuration_file
config.read_configuration_file(configuration_file)
def list_tasks(args):
# Read the configuration
config_file, _ = read_configuration_file(args.config_file)
if config_file is None:
return
for key in sorted(config_file.keys()):
print key
def run(args):
# Read the configuration
config_file, _ = read_configuration_file(args.config_file)
try:
task = config_file[args.task]
except:
raise Exception('Task \'{}\' cannot be found'.format(args.task))
# Set environment
environment = os.environ
if task['type'] == 'file':
environment["FILENAME"] = args.filename
run_task(args.task, env=environment, **task)
from config import read_configuration_file, write_configuration_file
CURRENT = "2.0"
if __name__ == "__main__":
conf = read_configuration_file()
old = False
if "static" not in conf:
old = True
conf["static"] = {}
conf["secret"]["sound_feedback"] = "off"
if old:
conf["static"]["conf_version"] = CURRENT
write_configuration_file(conf)
for name, param in self.params.iteritems():
nCombinations = nCombinations/len(param)
n = key / nCombinations
combination[name] = param[n]
key = key % nCombinations
return combination
def __iter__(self):
for n in range(len(self)):
yield self[n]
if __name__ == "__main__":
# read configuration file
config = sys.argv[1]
qsub_params, grid_params = read_configuration_file(config)
qsub_params['python'] = sys.executable
qsub_params['config'] = sys.argv[1]
qsub_params['command'] = " ".join(sys.argv[2:])
# generate parameter grid
grid = Grid(grid_params)
qsub_params['grid_size'] = len(grid)
# load qsub.py template as a string
path = pkg_resources.resource_filename('pyjob', 'templates/qsub.py')
with open(path, 'r') as f:
qsub_py = f.read()
qsubTemplate = QSubTemplate(qsub_py)