def __init__(self, properties, parent, id=-1, **kwargs):
from cpa.icons import get_icon, get_cpa_icon
wx.Frame.__init__(self,
parent,
id=id,
title='CellProfiler Analyst %s' % (display_version),
**kwargs)
self.properties = properties
self.SetIcon(get_cpa_icon())
self.tbicon = None
self.SetName('CPA')
self.Center(wx.HORIZONTAL)
self.CreateStatusBar()
self.log_io = True
#
# Setup toolbar
#
tb = self.CreateToolBar(wx.TB_HORZ_TEXT | wx.TB_FLAT)
tb.SetToolBitmapSize((32, 32))
tb.SetSize((-1, 132))
tb.AddTool(ID_IMAGE_GALLERY.GetId(),
'Image Gallery',
get_icon("image_gallery").ConvertToBitmap(),
shortHelp='Image Gallery')
tb.AddTool(ID_CLASSIFIER.GetId(),
'Classifier',
get_icon("classifier").ConvertToBitmap(),
shortHelp='Classifier')
# tb.AddLabelTool(ID_CLASSIFIER, 'PixelClassifier', get_icon("pixelclassifier").ConvertToBitmap(), shortHelp='Pixel-based Classifier', longHelp='Launch pixel-based Classifier')
tb.AddTool(ID_PLATE_VIEWER.GetId(),
'Plate Viewer',
get_icon("platemapbrowser").ConvertToBitmap(),
shortHelp='Plate Viewer')
# tb.AddLabelTool(ID_IMAGE_VIEWER, 'ImageViewer', get_icon("image_viewer").ConvertToBitmap(), shortHelp='Image Viewer', longHelp='Launch ImageViewer')
tb.AddTool(ID_SCATTER.GetId(),
'Scatter Plot',
get_icon("scatter").ConvertToBitmap(),
shortHelp='Scatter Plot')
tb.AddTool(ID_HISTOGRAM.GetId(),
'Histogram',
get_icon("histogram").ConvertToBitmap(),
shortHelp='Histogram')
tb.AddTool(ID_DENSITY.GetId(),
'Density Plot',
get_icon("density").ConvertToBitmap(),
shortHelp='Density Plot')
tb.AddTool(ID_BOXPLOT.GetId(),
'Box Plot',
get_icon("boxplot").ConvertToBitmap(),
shortHelp='Box Plot')
tb.AddTool(ID_TABLE_VIEWER.GetId(),
'Table Viewer',
get_icon("data_grid").ConvertToBitmap(),
shortHelp='Table Viewer')
# tb.AddLabelTool(ID_NORMALIZE, 'Normalize', get_icon("normalize").ConvertToBitmap(), shortHelp='Normalization Tool', longHelp='Launch Feature Normalization Tool')
tb.Realize()
#
# Setup menu items
#
self.SetMenuBar(wx.MenuBar())
fileMenu = wx.Menu()
loadPropertiesMenuItem = fileMenu.Append(
-1, 'Load properties file', helpString='Load a properties file.')
savePropertiesMenuItem = fileMenu.Append(
-1, 'Save properties\tCtrl+S', helpString='Save the properties.')
## loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load properties\tCtrl+O', helpString='Open another properties file.')
fileMenu.AppendSeparator()
saveWorkspaceMenuItem = fileMenu.Append(
-1,
'Save workspace\tCtrl+Shift+S',
helpString='Save the currently open plots and settings.')
loadWorkspaceMenuItem = fileMenu.Append(
-1,
'Load workspace\tCtrl+Shift+O',
helpString='Open plots saved in a previous workspace.')
fileMenu.AppendSeparator()
saveLogMenuItem = fileMenu.Append(
-1, 'Save log', helpString='Save the contents of the log window.')
fileMenu.AppendSeparator()
self.exitMenuItem = fileMenu.Append(wx.ID_EXIT,
'Exit\tCtrl+Q',
helpString='Exit classifier')
self.GetMenuBar().Append(fileMenu, 'File')
toolsMenu = wx.Menu()
imageGalleryMenuItem = toolsMenu.Append(
ID_IMAGE_GALLERY,
'Image Gallery Viewer\tCtrl+Shift+I',
helpString='Launches the Image Gallery')
classifierMenuItem = toolsMenu.Append(
ID_CLASSIFIER,
'Classifier\tCtrl+Shift+C',
helpString='Launches Classifier.')
plateMapMenuItem = toolsMenu.Append(
ID_PLATE_VIEWER,
'Plate Viewer\tCtrl+Shift+P',
helpString='Launches the Plate Viewer tool.')
#imageViewerMenuItem = toolsMenu.Append(ID_IMAGE_VIEWER, 'Image Viewer\tCtrl+Shift+I', helpString='Launches the ImageViewer tool.')
scatterMenuItem = toolsMenu.Append(
ID_SCATTER,
'Scatter Plot\tCtrl+Shift+A',
helpString='Launches the Scatter Plot tool.')
histogramMenuItem = toolsMenu.Append(
ID_HISTOGRAM,
'Histogram Plot\tCtrl+Shift+H',
helpString='Launches the Histogram Plot tool.')
densityMenuItem = toolsMenu.Append(
ID_DENSITY,
'Density Plot\tCtrl+Shift+D',
helpString='Launches the Density Plot tool.')
boxplotMenuItem = toolsMenu.Append(
ID_BOXPLOT,
'Box Plot\tCtrl+Shift+B',
helpString='Launches the Box Plot tool.')
dataTableMenuItem = toolsMenu.Append(
ID_TABLE_VIEWER,
'Table Viewer\tCtrl+Shift+T',
helpString='Launches the Table Viewer tool.')
normalizeMenuItem = toolsMenu.Append(
ID_NORMALIZE,
'Normalization Tool\tCtrl+Shift+T',
helpString=
'Launches a tool for generating normalized values for measurement columns in your tables.'
)
self.GetMenuBar().Append(toolsMenu, 'Tools')
logMenu = wx.Menu()
debugMenuItem = logMenu.AppendRadioItem(
-1,
'Debug\tCtrl+1',
help='Logging window will display debug-level messages.')
infoMenuItem = logMenu.AppendRadioItem(
-1,
'Info\tCtrl+2',
help='Logging window will display info-level messages.')
warnMenuItem = logMenu.AppendRadioItem(
-1,
'Warnings\tCtrl+3',
help='Logging window will display warning-level messages.')
errorMenuItem = logMenu.AppendRadioItem(
-1,
'Errors\tCtrl+4',
help='Logging window will display error-level messages.')
criticalMenuItem = logMenu.AppendRadioItem(
-1,
'Critical\tCtrl+5',
help='Logging window will only display critical messages.')
logioItem = logMenu.AppendCheckItem(-1,
item='Log image loading',
help='Log image loader events')
infoMenuItem.Check()
logioItem.Check()
self.GetMenuBar().Append(logMenu, 'Logging')
advancedMenu = wx.Menu()
#normalizeMenuItem = advancedMenu.Append(-1, 'Launch feature normalization tool', helpString='Launches a tool for generating normalized values for measurement columns in your tables.')
queryMenuItem = advancedMenu.Append(
-1,
'Launch SQL query tool',
helpString=
'Opens a tool for making SQL queries to the CPA database. Advanced users only.'
)
clearTableLinksMenuItem = advancedMenu.Append(
-1,
'Clear table linking information',
helpString=
'Removes the tables from your database that tell CPA how to link your tables.'
)
self.GetMenuBar().Append(advancedMenu, 'Advanced')
import cpa.helpmenu
self.GetMenuBar().Append(cpa.helpmenu.make_help_menu(self, main=True),
'Help')
# console and logging
self.console = wx.TextCtrl(self,
-1,
'',
style=wx.TE_MULTILINE | wx.TE_READONLY
| wx.TE_RICH2)
self.console.SetFont(
wx.Font(10, wx.FONTFAMILY_DEFAULT, wx.FONTSTYLE_NORMAL,
wx.FONTWEIGHT_NORMAL))
# Black background and white font
self.console.SetDefaultStyle(wx.TextAttr(wx.WHITE, wx.BLACK))
self.console.SetBackgroundColour('#000000')
log_level = logging.INFO # INFO is the default log level
self.logr = logging.getLogger()
self.set_log_level(log_level)
self.log_text = ""
def update(x):
self.log_text += x + '\n'
hdlr = FuncLog(update)
# hdlr.setFormatter(logging.Formatter('[%(levelname)s] %(message)s'))
# hdlr.setFormatter(logging.Formatter('%(levelname)s | %(name)s | %(message)s [@ %(asctime)s in %(filename)s:%(lineno)d]'))
self.logr.addHandler(hdlr)
# log_levels are 10,20,30,40,50
logMenu.GetMenuItems()[(log_level // 10) - 1].Check()
self.Bind(wx.EVT_MENU, lambda _: self.set_log_level(logging.DEBUG),
debugMenuItem)
self.Bind(wx.EVT_MENU, lambda _: self.set_log_level(logging.INFO),
infoMenuItem)
self.Bind(wx.EVT_MENU, lambda _: self.set_log_level(logging.WARN),
warnMenuItem)
self.Bind(wx.EVT_MENU, lambda _: self.set_log_level(logging.ERROR),
errorMenuItem)
self.Bind(wx.EVT_MENU, lambda _: self.set_log_level(logging.CRITICAL),
criticalMenuItem)
self.Bind(wx.EVT_MENU, self.on_toggle_iologging, logioItem)
self.Bind(wx.EVT_MENU, self.on_load_properties, loadPropertiesMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_properties, savePropertiesMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_workspace, saveWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.on_load_workspace, loadWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.save_log, saveLogMenuItem)
self.Bind(wx.EVT_MENU, self.launch_normalization_tool,
normalizeMenuItem)
self.Bind(wx.EVT_MENU, self.clear_link_tables, clearTableLinksMenuItem)
self.Bind(wx.EVT_MENU, self.launch_query_maker, queryMenuItem)
self.Bind(wx.EVT_TOOL, self.launch_classifier, id=ID_CLASSIFIER)
self.Bind(wx.EVT_TOOL,
self.launch_plate_map_browser,
id=ID_PLATE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_table_viewer, id=ID_TABLE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_image_viewer, id=ID_IMAGE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_image_gallery, id=ID_IMAGE_GALLERY)
self.Bind(wx.EVT_TOOL, self.launch_scatter_plot, id=ID_SCATTER)
self.Bind(wx.EVT_TOOL, self.launch_histogram_plot, id=ID_HISTOGRAM)
self.Bind(wx.EVT_TOOL, self.launch_density_plot, id=ID_DENSITY)
self.Bind(wx.EVT_TOOL, self.launch_box_plot, id=ID_BOXPLOT)
self.Bind(wx.EVT_TOOL, self.launch_normalization_tool, id=ID_NORMALIZE)
self.Bind(wx.EVT_MENU, self.on_close, self.exitMenuItem)
self.Bind(wx.EVT_CLOSE, self.on_close)
self.Bind(wx.EVT_IDLE, self.on_idle)
def __init__(self, properties, parent, id=-1, **kwargs):
wx.Frame.__init__(self, parent, id=id, title='CellProfiler Analyst 2.0 (r%s)'%(__version__), **kwargs)
self.properties = properties
self.SetIcon(get_cpa_icon())
if not sys.platform.startswith('win'):
# this is good for Mac, but on windows creates a (currently) unused icon in the system tray
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(get_cpa_icon(), 'CellProfiler Analyst 2.0')
else:
self.tbicon = None
self.SetName('CPA')
self.Center(wx.HORIZONTAL)
self.CreateStatusBar()
#
# Setup toolbar
#
tb = self.CreateToolBar(wx.TB_HORZ_TEXT|wx.TB_FLAT)
tb.SetToolBitmapSize((32,32))
tb.SetSize((-1,132))
tb.AddLabelTool(ID_CLASSIFIER, 'Classifier', cpa.icons.classifier.ConvertToBitmap(), shortHelp='Classifier', longHelp='Launch Classifier')
tb.AddLabelTool(ID_PLATE_VIEWER, 'PlateViewer', cpa.icons.platemapbrowser.ConvertToBitmap(), shortHelp='Plate Viewer', longHelp='Launch Plate Viewer')
tb.AddLabelTool(ID_TABLE_VIEWER, 'TableViewer', cpa.icons.data_grid.ConvertToBitmap(), shortHelp='Table Viewer', longHelp='Launch TableViewer')
tb.AddLabelTool(ID_IMAGE_VIEWER, 'ImageViewer', cpa.icons.image_viewer.ConvertToBitmap(), shortHelp='Image Viewer', longHelp='Launch ImageViewer')
tb.AddLabelTool(ID_SCATTER, 'ScatterPlot', cpa.icons.scatter.ConvertToBitmap(), shortHelp='Scatter Plot', longHelp='Launch Scatter Plot')
tb.AddLabelTool(ID_HISTOGRAM, 'Histogram', cpa.icons.histogram.ConvertToBitmap(), shortHelp='Histogram', longHelp='Launch Histogram')
tb.AddLabelTool(ID_DENSITY, 'DensityPlot', cpa.icons.density.ConvertToBitmap(), shortHelp='Density Plot', longHelp='Launch Density Plot')
tb.AddLabelTool(ID_BOXPLOT, 'BoxPlot', cpa.icons.boxplot.ConvertToBitmap(), shortHelp='Box Plot', longHelp='Launch Box Plot')
tb.Realize()
# TODO: IMG-1071 - The following was meant to resize based on the toolbar size but GetEffectiveMinSize breaks on Macs
#self.SetDimensions(-1, -1, tb.GetEffectiveMinSize().width, -1, wx.SIZE_USE_EXISTING)
#
# Setup menu items
#
self.SetMenuBar(wx.MenuBar())
fileMenu = wx.Menu()
savePropertiesMenuItem = fileMenu.Append(-1, 'Save properties\tCtrl+S', help='Save the properties.')
## loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load properties\tCtrl+O', help='Open another properties file.')
fileMenu.AppendSeparator()
saveWorkspaceMenuItem = fileMenu.Append(-1, 'Save workspace\tCtrl+Shift+S', help='Save the currently open plots and settings.')
loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load workspace\tCtrl+Shift+O', help='Open plots saved in a previous workspace.')
fileMenu.AppendSeparator()
saveLogMenuItem = fileMenu.Append(-1, 'Save log', help='Save the contents of the log window.')
fileMenu.AppendSeparator()
self.exitMenuItem = fileMenu.Append(wx.ID_EXIT, 'Exit\tCtrl+Q', help='Exit classifier')
self.GetMenuBar().Append(fileMenu, 'File')
toolsMenu = wx.Menu()
classifierMenuItem = toolsMenu.Append(ID_CLASSIFIER, 'Classifier\tCtrl+Shift+C', help='Launches Classifier.')
plateMapMenuItem = toolsMenu.Append(ID_PLATE_VIEWER, 'Plate Viewer\tCtrl+Shift+P', help='Launches the Plate Viewer tool.')
dataTableMenuItem = toolsMenu.Append(ID_TABLE_VIEWER, 'Data Table\tCtrl+Shift+T', help='Launches the Data Table tool.')
imageViewerMenuItem = toolsMenu.Append(ID_IMAGE_VIEWER, 'Image Viewer\tCtrl+Shift+I', help='Launches the ImageViewer tool.')
scatterMenuItem = toolsMenu.Append(ID_SCATTER, 'Scatter Plot\tCtrl+Shift+A', help='Launches the Scatter Plot tool.')
histogramMenuItem = toolsMenu.Append(ID_HISTOGRAM, 'Histogram Plot\tCtrl+Shift+H', help='Launches the Histogram Plot tool.')
densityMenuItem = toolsMenu.Append(ID_DENSITY, 'Density Plot\tCtrl+Shift+D', help='Launches the Density Plot tool.')
boxplotMenuItem = toolsMenu.Append(ID_BOXPLOT, 'Box Plot\tCtrl+Shift+B', help='Launches the Box Plot tool.')
self.GetMenuBar().Append(toolsMenu, 'Tools')
logMenu = wx.Menu()
debugMenuItem = logMenu.AppendRadioItem(-1, 'Debug\tCtrl+1', help='Logging window will display debug-level messages.')
infoMenuItem = logMenu.AppendRadioItem(-1, 'Info\tCtrl+2', help='Logging window will display info-level messages.')
warnMenuItem = logMenu.AppendRadioItem(-1, 'Warnings\tCtrl+3', help='Logging window will display warning-level messages.')
errorMenuItem = logMenu.AppendRadioItem(-1, 'Errors\tCtrl+4', help='Logging window will display error-level messages.')
criticalMenuItem = logMenu.AppendRadioItem(-1, 'Critical\tCtrl+5', help='Logging window will only display critical messages.')
infoMenuItem.Check()
self.GetMenuBar().Append(logMenu, 'Logging')
advancedMenu = wx.Menu()
normalizeMenuItem = advancedMenu.Append(-1, 'Launch feature normalization tool', help='Launches a tool for generating normalized values for measurement columns in your tables.')
queryMenuItem = advancedMenu.Append(-1, 'Launch SQL query tool', help='Opens a tool for making SQL queries to the CPA database. Advanced users only.')
clearTableLinksMenuItem = advancedMenu.Append(-1, 'Clear table linking information', help='Removes the tables from your database that tell CPA how to link your tables.')
self.GetMenuBar().Append(advancedMenu, 'Advanced')
self.GetMenuBar().Append(cpa.helpmenu.make_help_menu(self), 'Help')
# console and logging
self.console = wx.TextCtrl(self, -1, '', style=wx.TE_MULTILINE|wx.TE_READONLY)
self.console.SetFont(wx.Font(10, wx.FONTFAMILY_DEFAULT, wx.FONTSTYLE_NORMAL, wx.FONTWEIGHT_NORMAL))
self.console.SetBackgroundColour('#111111')
self.console.SetForegroundColour('#DDDDDD')
log_level = logging.DEBUG
self.logr = logging.getLogger()
self.set_log_level(log_level)
self.log_text = ''
def update(x):
self.log_text += x+'\n'
hdlr = FuncLog(update)
# hdlr.setFormatter(logging.Formatter('[%(levelname)s] %(message)s'))
# hdlr.setFormatter(logging.Formatter('%(levelname)s | %(name)s | %(message)s [@ %(asctime)s in %(filename)s:%(lineno)d]'))
self.logr.addHandler(hdlr)
# log_levels are 10,20,30,40,50
logMenu.GetMenuItems()[(log_level/10)-1].Check()
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.DEBUG), debugMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.INFO), infoMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.WARN), warnMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.ERROR), errorMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.CRITICAL), criticalMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_properties, savePropertiesMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_workspace, saveWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.on_load_workspace, loadWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.save_log, saveLogMenuItem)
self.Bind(wx.EVT_MENU, self.launch_normalization_tool, normalizeMenuItem)
self.Bind(wx.EVT_MENU, self.clear_link_tables, clearTableLinksMenuItem)
self.Bind(wx.EVT_MENU, self.launch_query_maker, queryMenuItem)
self.Bind(wx.EVT_TOOL, self.launch_classifier, id=ID_CLASSIFIER)
self.Bind(wx.EVT_TOOL, self.launch_plate_map_browser, id=ID_PLATE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_table_viewer, id=ID_TABLE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_image_viewer, id=ID_IMAGE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_scatter_plot, id=ID_SCATTER)
self.Bind(wx.EVT_TOOL, self.launch_histogram_plot, id=ID_HISTOGRAM)
self.Bind(wx.EVT_TOOL, self.launch_density_plot, id=ID_DENSITY)
self.Bind(wx.EVT_TOOL, self.launch_box_plot, id=ID_BOXPLOT)
self.Bind(wx.EVT_MENU, self.on_close, self.exitMenuItem)
self.Bind(wx.EVT_CLOSE, self.on_close)
self.Bind(wx.EVT_IDLE, self.on_idle)
def __init__(self, properties, parent, id=-1, **kwargs):
wx.Frame.__init__(self,
parent,
id=id,
title='CellProfiler Analyst 2.0 (r%s)' %
(__version__),
**kwargs)
self.properties = properties
self.SetIcon(get_cpa_icon())
if not sys.platform.startswith('win'):
# this is good for Mac, but on windows creates a (currently) unused icon in the system tray
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(get_cpa_icon(), 'CellProfiler Analyst 2.0')
else:
self.tbicon = None
self.SetName('CPA')
self.Center(wx.HORIZONTAL)
self.CreateStatusBar()
#
# Setup toolbar
#
tb = self.CreateToolBar(wx.TB_HORZ_TEXT | wx.TB_FLAT)
tb.SetToolBitmapSize((32, 32))
tb.SetSize((-1, 132))
tb.AddLabelTool(ID_CLASSIFIER,
'Classifier',
cpa.icons.classifier.ConvertToBitmap(),
shortHelp='Classifier',
longHelp='Launch Classifier')
tb.AddLabelTool(ID_PLATE_VIEWER,
'PlateViewer',
cpa.icons.platemapbrowser.ConvertToBitmap(),
shortHelp='Plate Viewer',
longHelp='Launch Plate Viewer')
tb.AddLabelTool(ID_TABLE_VIEWER,
'TableViewer',
cpa.icons.data_grid.ConvertToBitmap(),
shortHelp='Table Viewer',
longHelp='Launch TableViewer')
tb.AddLabelTool(ID_IMAGE_VIEWER,
'ImageViewer',
cpa.icons.image_viewer.ConvertToBitmap(),
shortHelp='Image Viewer',
longHelp='Launch ImageViewer')
tb.AddLabelTool(ID_SCATTER,
'ScatterPlot',
cpa.icons.scatter.ConvertToBitmap(),
shortHelp='Scatter Plot',
longHelp='Launch Scatter Plot')
tb.AddLabelTool(ID_HISTOGRAM,
'Histogram',
cpa.icons.histogram.ConvertToBitmap(),
shortHelp='Histogram',
longHelp='Launch Histogram')
tb.AddLabelTool(ID_DENSITY,
'DensityPlot',
cpa.icons.density.ConvertToBitmap(),
shortHelp='Density Plot',
longHelp='Launch Density Plot')
tb.AddLabelTool(ID_BOXPLOT,
'BoxPlot',
cpa.icons.boxplot.ConvertToBitmap(),
shortHelp='Box Plot',
longHelp='Launch Box Plot')
tb.Realize()
# TODO: IMG-1071 - The following was meant to resize based on the toolbar size but GetEffectiveMinSize breaks on Macs
#self.SetDimensions(-1, -1, tb.GetEffectiveMinSize().width, -1, wx.SIZE_USE_EXISTING)
#
# Setup menu items
#
self.SetMenuBar(wx.MenuBar())
fileMenu = wx.Menu()
savePropertiesMenuItem = fileMenu.Append(-1,
'Save properties\tCtrl+S',
help='Save the properties.')
## loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load properties\tCtrl+O', help='Open another properties file.')
fileMenu.AppendSeparator()
saveWorkspaceMenuItem = fileMenu.Append(
-1,
'Save workspace\tCtrl+Shift+S',
help='Save the currently open plots and settings.')
loadWorkspaceMenuItem = fileMenu.Append(
-1,
'Load workspace\tCtrl+Shift+O',
help='Open plots saved in a previous workspace.')
fileMenu.AppendSeparator()
saveLogMenuItem = fileMenu.Append(
-1, 'Save log', help='Save the contents of the log window.')
fileMenu.AppendSeparator()
self.exitMenuItem = fileMenu.Append(wx.ID_EXIT,
'Exit\tCtrl+Q',
help='Exit classifier')
self.GetMenuBar().Append(fileMenu, 'File')
toolsMenu = wx.Menu()
classifierMenuItem = toolsMenu.Append(ID_CLASSIFIER,
'Classifier\tCtrl+Shift+C',
help='Launches Classifier.')
plateMapMenuItem = toolsMenu.Append(
ID_PLATE_VIEWER,
'Plate Viewer\tCtrl+Shift+P',
help='Launches the Plate Viewer tool.')
dataTableMenuItem = toolsMenu.Append(
ID_TABLE_VIEWER,
'Data Table\tCtrl+Shift+T',
help='Launches the Data Table tool.')
imageViewerMenuItem = toolsMenu.Append(
ID_IMAGE_VIEWER,
'Image Viewer\tCtrl+Shift+I',
help='Launches the ImageViewer tool.')
scatterMenuItem = toolsMenu.Append(
ID_SCATTER,
'Scatter Plot\tCtrl+Shift+A',
help='Launches the Scatter Plot tool.')
histogramMenuItem = toolsMenu.Append(
ID_HISTOGRAM,
'Histogram Plot\tCtrl+Shift+H',
help='Launches the Histogram Plot tool.')
densityMenuItem = toolsMenu.Append(
ID_DENSITY,
'Density Plot\tCtrl+Shift+D',
help='Launches the Density Plot tool.')
boxplotMenuItem = toolsMenu.Append(ID_BOXPLOT,
'Box Plot\tCtrl+Shift+B',
help='Launches the Box Plot tool.')
self.GetMenuBar().Append(toolsMenu, 'Tools')
logMenu = wx.Menu()
debugMenuItem = logMenu.AppendRadioItem(
-1,
'Debug\tCtrl+1',
help='Logging window will display debug-level messages.')
infoMenuItem = logMenu.AppendRadioItem(
-1,
'Info\tCtrl+2',
help='Logging window will display info-level messages.')
warnMenuItem = logMenu.AppendRadioItem(
-1,
'Warnings\tCtrl+3',
help='Logging window will display warning-level messages.')
errorMenuItem = logMenu.AppendRadioItem(
-1,
'Errors\tCtrl+4',
help='Logging window will display error-level messages.')
criticalMenuItem = logMenu.AppendRadioItem(
-1,
'Critical\tCtrl+5',
help='Logging window will only display critical messages.')
infoMenuItem.Check()
self.GetMenuBar().Append(logMenu, 'Logging')
advancedMenu = wx.Menu()
normalizeMenuItem = advancedMenu.Append(
-1,
'Launch feature normalization tool',
help=
'Launches a tool for generating normalized values for measurement columns in your tables.'
)
queryMenuItem = advancedMenu.Append(
-1,
'Launch SQL query tool',
help=
'Opens a tool for making SQL queries to the CPA database. Advanced users only.'
)
clearTableLinksMenuItem = advancedMenu.Append(
-1,
'Clear table linking information',
help=
'Removes the tables from your database that tell CPA how to link your tables.'
)
self.GetMenuBar().Append(advancedMenu, 'Advanced')
self.GetMenuBar().Append(cpa.helpmenu.make_help_menu(self), 'Help')
# console and logging
self.console = wx.TextCtrl(self,
-1,
'',
style=wx.TE_MULTILINE | wx.TE_READONLY)
self.console.SetFont(
wx.Font(10, wx.FONTFAMILY_DEFAULT, wx.FONTSTYLE_NORMAL,
wx.FONTWEIGHT_NORMAL))
self.console.SetBackgroundColour('#111111')
self.console.SetForegroundColour('#DDDDDD')
log_level = logging.DEBUG
self.logr = logging.getLogger()
self.set_log_level(log_level)
self.log_text = ''
def update(x):
self.log_text += x + '\n'
hdlr = FuncLog(update)
# hdlr.setFormatter(logging.Formatter('[%(levelname)s] %(message)s'))
# hdlr.setFormatter(logging.Formatter('%(levelname)s | %(name)s | %(message)s [@ %(asctime)s in %(filename)s:%(lineno)d]'))
self.logr.addHandler(hdlr)
# log_levels are 10,20,30,40,50
logMenu.GetMenuItems()[(log_level / 10) - 1].Check()
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.DEBUG),
debugMenuItem)
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.INFO),
infoMenuItem)
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.WARN),
warnMenuItem)
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.ERROR),
errorMenuItem)
self.Bind(wx.EVT_MENU, lambda
(_): self.set_log_level(logging.CRITICAL), criticalMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_properties, savePropertiesMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_workspace, saveWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.on_load_workspace, loadWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.save_log, saveLogMenuItem)
self.Bind(wx.EVT_MENU, self.launch_normalization_tool,
normalizeMenuItem)
self.Bind(wx.EVT_MENU, self.clear_link_tables, clearTableLinksMenuItem)
self.Bind(wx.EVT_MENU, self.launch_query_maker, queryMenuItem)
self.Bind(wx.EVT_TOOL, self.launch_classifier, id=ID_CLASSIFIER)
self.Bind(wx.EVT_TOOL,
self.launch_plate_map_browser,
id=ID_PLATE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_table_viewer, id=ID_TABLE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_image_viewer, id=ID_IMAGE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_scatter_plot, id=ID_SCATTER)
self.Bind(wx.EVT_TOOL, self.launch_histogram_plot, id=ID_HISTOGRAM)
self.Bind(wx.EVT_TOOL, self.launch_density_plot, id=ID_DENSITY)
self.Bind(wx.EVT_TOOL, self.launch_box_plot, id=ID_BOXPLOT)
self.Bind(wx.EVT_MENU, self.on_close, self.exitMenuItem)
self.Bind(wx.EVT_CLOSE, self.on_close)
self.Bind(wx.EVT_IDLE, self.on_idle)