def on_show_about(self, evt):
''' Shows a message box with the version number etc.'''
message = ('CellProfiler Analyst was developed at The Broad Institute\n'
'Imaging Platform and is distributed under the GNU General\n'
'Public License version 2.')
info = wx.AboutDialogInfo()
info.SetIcon(icons.get_cpa_icon())
info.SetName('CellProfiler Analyst 2.0 (%s)'%('r'+str(__version__) or 'unknown revision'))
info.SetDescription(message)
info.AddDeveloper('Adam Fraser')
info.AddDeveloper('Thouis (Ray) Jones')
info.AddDeveloper('Vebjorn Ljosa')
info.SetWebSite('www.CellProfiler.org')
wx.AboutBox(info)
def on_show_about(self, evt):
''' Shows a message box with the version number etc.'''
message = (
'CellProfiler Analyst was developed at The Broad Institute\n'
'Imaging Platform and is distributed under the GNU General\n'
'Public License version 2.')
info = wx.AboutDialogInfo()
info.SetIcon(icons.get_cpa_icon())
info.SetName('CellProfiler Analyst 2.0 (%s)' %
('r' + str(__version__) or 'unknown revision'))
info.SetDescription(message)
info.AddDeveloper('Adam Fraser')
info.AddDeveloper('Thouis (Ray) Jones')
info.AddDeveloper('Vebjorn Ljosa')
info.SetWebSite('www.CellProfiler.org')
wx.AboutBox(info)
def __init__(self, properties, parent, id=-1, **kwargs):
wx.Frame.__init__(self, parent, id=id, title='CellProfiler Analyst 2.0 (r%s)'%(__version__), **kwargs)
self.properties = properties
self.SetIcon(get_cpa_icon())
if not sys.platform.startswith('win'):
# this is good for Mac, but on windows creates a (currently) unused icon in the system tray
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(get_cpa_icon(), 'CellProfiler Analyst 2.0')
else:
self.tbicon = None
self.SetName('CPA')
self.Center(wx.HORIZONTAL)
self.CreateStatusBar()
#
# Setup toolbar
#
tb = self.CreateToolBar(wx.TB_HORZ_TEXT|wx.TB_FLAT)
tb.SetToolBitmapSize((32,32))
tb.SetSize((-1,132))
tb.AddLabelTool(ID_CLASSIFIER, 'Classifier', icons.classifier.ConvertToBitmap(), shortHelp='Classifier', longHelp='Launch Classifier')
tb.AddLabelTool(ID_PLATE_VIEWER, 'PlateViewer', icons.platemapbrowser.ConvertToBitmap(), shortHelp='Plate Viewer', longHelp='Launch Plate Viewer')
tb.AddLabelTool(ID_TABLE_VIEWER, 'TableViewer', icons.data_grid.ConvertToBitmap(), shortHelp='Table Viewer', longHelp='Launch TableViewer')
tb.AddLabelTool(ID_IMAGE_VIEWER, 'ImageViewer', icons.image_viewer.ConvertToBitmap(), shortHelp='Image Viewer', longHelp='Launch ImageViewer')
tb.AddLabelTool(ID_SCATTER, 'ScatterPlot', icons.scatter.ConvertToBitmap(), shortHelp='Scatter Plot', longHelp='Launch Scatter Plot')
tb.AddLabelTool(ID_HISTOGRAM, 'Histogram', icons.histogram.ConvertToBitmap(), shortHelp='Histogram', longHelp='Launch Histogram')
tb.AddLabelTool(ID_DENSITY, 'DensityPlot', icons.density.ConvertToBitmap(), shortHelp='Density Plot', longHelp='Launch Density Plot')
tb.AddLabelTool(ID_BOXPLOT, 'BoxPlot', icons.boxplot.ConvertToBitmap(), shortHelp='Box Plot', longHelp='Launch Box Plot')
tb.Realize()
# TODO: IMG-1071 - The following was meant to resize based on the toolbar size but GetEffectiveMinSize breaks on Macs
#self.SetDimensions(-1, -1, tb.GetEffectiveMinSize().width, -1, wx.SIZE_USE_EXISTING)
#
# Setup menu items
#
self.SetMenuBar(wx.MenuBar())
fileMenu = wx.Menu()
savePropertiesMenuItem = fileMenu.Append(-1, 'Save properties\tCtrl+S', help='Save the properties.')
## loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load properties\tCtrl+O', help='Open another properties file.')
fileMenu.AppendSeparator()
saveWorkspaceMenuItem = fileMenu.Append(-1, 'Save workspace\tCtrl+Shift+S', help='Save the currently open plots and settings.')
loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load workspace\tCtrl+Shift+O', help='Open plots saved in a previous workspace.')
fileMenu.AppendSeparator()
saveLogMenuItem = fileMenu.Append(-1, 'Save log', help='Save the contents of the log window.')
fileMenu.AppendSeparator()
self.exitMenuItem = fileMenu.Append(wx.ID_EXIT, 'Exit\tCtrl+Q', help='Exit classifier')
self.GetMenuBar().Append(fileMenu, 'File')
toolsMenu = wx.Menu()
classifierMenuItem = toolsMenu.Append(ID_CLASSIFIER, 'Classifier\tCtrl+Shift+C', help='Launches Classifier.')
plateMapMenuItem = toolsMenu.Append(ID_PLATE_VIEWER, 'Plate Viewer\tCtrl+Shift+P', help='Launches the Plate Viewer tool.')
dataTableMenuItem = toolsMenu.Append(ID_TABLE_VIEWER, 'Data Table\tCtrl+Shift+T', help='Launches the Data Table tool.')
imageViewerMenuItem = toolsMenu.Append(ID_IMAGE_VIEWER, 'Image Viewer\tCtrl+Shift+I', help='Launches the ImageViewer tool.')
scatterMenuItem = toolsMenu.Append(ID_SCATTER, 'Scatter Plot\tCtrl+Shift+A', help='Launches the Scatter Plot tool.')
histogramMenuItem = toolsMenu.Append(ID_HISTOGRAM, 'Histogram Plot\tCtrl+Shift+H', help='Launches the Histogram Plot tool.')
densityMenuItem = toolsMenu.Append(ID_DENSITY, 'Density Plot\tCtrl+Shift+D', help='Launches the Density Plot tool.')
boxplotMenuItem = toolsMenu.Append(ID_BOXPLOT, 'Box Plot\tCtrl+Shift+B', help='Launches the Box Plot tool.')
self.GetMenuBar().Append(toolsMenu, 'Tools')
logMenu = wx.Menu()
debugMenuItem = logMenu.AppendRadioItem(-1, 'Debug\tCtrl+1', help='Logging window will display debug-level messages.')
infoMenuItem = logMenu.AppendRadioItem(-1, 'Info\tCtrl+2', help='Logging window will display info-level messages.')
warnMenuItem = logMenu.AppendRadioItem(-1, 'Warnings\tCtrl+3', help='Logging window will display warning-level messages.')
errorMenuItem = logMenu.AppendRadioItem(-1, 'Errors\tCtrl+4', help='Logging window will display error-level messages.')
criticalMenuItem = logMenu.AppendRadioItem(-1, 'Critical\tCtrl+5', help='Logging window will only display critical messages.')
infoMenuItem.Check()
self.GetMenuBar().Append(logMenu, 'Logging')
advancedMenu = wx.Menu()
normalizeMenuItem = advancedMenu.Append(-1, 'Launch feature normalization tool', help='Launches a tool for generating normalized values for measurement columns in your tables.')
queryMenuItem = advancedMenu.Append(-1, 'Launch SQL query tool', help='Opens a tool for making SQL queries to the CPA database. Advanced users only.')
clearTableLinksMenuItem = advancedMenu.Append(-1, 'Clear table linking information', help='Removes the tables from your database that tell CPA how to link your tables.')
self.GetMenuBar().Append(advancedMenu, 'Advanced')
helpMenu = wx.Menu()
aboutMenuItem = helpMenu.Append(-1, text='About', help='About CPA 2.0')
self.GetMenuBar().Append(helpMenu, 'Help')
# console and logging
self.console = wx.TextCtrl(self, -1, '', style=wx.TE_MULTILINE|wx.TE_READONLY)
self.console.SetFont(wx.Font(10, wx.FONTFAMILY_DEFAULT, wx.FONTSTYLE_NORMAL, wx.FONTWEIGHT_NORMAL))
self.console.SetBackgroundColour('#111111')
self.console.SetForegroundColour('#DDDDDD')
log_level = logging.DEBUG
self.logr = logging.getLogger()
self.set_log_level(log_level)
self.log_text = ''
def update(x):
self.log_text += x+'\n'
hdlr = FuncLog(update)
# hdlr.setFormatter(logging.Formatter('[%(levelname)s] %(message)s'))
# hdlr.setFormatter(logging.Formatter('%(levelname)s | %(name)s | %(message)s [@ %(asctime)s in %(filename)s:%(lineno)d]'))
self.logr.addHandler(hdlr)
# log_levels are 10,20,30,40,50
logMenu.GetMenuItems()[(log_level/10)-1].Check()
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.DEBUG), debugMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.INFO), infoMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.WARN), warnMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.ERROR), errorMenuItem)
self.Bind(wx.EVT_MENU, lambda(_):self.set_log_level(logging.CRITICAL), criticalMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_properties, savePropertiesMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_workspace, saveWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.on_load_workspace, loadWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.save_log, saveLogMenuItem)
self.Bind(wx.EVT_MENU, self.launch_normalization_tool, normalizeMenuItem)
self.Bind(wx.EVT_MENU, self.clear_link_tables, clearTableLinksMenuItem)
self.Bind(wx.EVT_MENU, self.launch_query_maker, queryMenuItem)
self.Bind(wx.EVT_MENU, self.on_show_about, aboutMenuItem)
self.Bind(wx.EVT_TOOL, self.launch_classifier, id=ID_CLASSIFIER)
self.Bind(wx.EVT_TOOL, self.launch_plate_map_browser, id=ID_PLATE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_table_viewer, id=ID_TABLE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_image_viewer, id=ID_IMAGE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_scatter_plot, id=ID_SCATTER)
self.Bind(wx.EVT_TOOL, self.launch_histogram_plot, id=ID_HISTOGRAM)
self.Bind(wx.EVT_TOOL, self.launch_density_plot, id=ID_DENSITY)
self.Bind(wx.EVT_TOOL, self.launch_box_plot, id=ID_BOXPLOT)
self.Bind(wx.EVT_MENU, self.on_close, self.exitMenuItem)
self.Bind(wx.EVT_CLOSE, self.on_close)
self.Bind(wx.EVT_IDLE, self.on_idle)
def __init__(self, properties, parent, id=-1, **kwargs):
wx.Frame.__init__(self,
parent,
id=id,
title='CellProfiler Analyst 2.0 (r%s)' %
(__version__),
**kwargs)
self.properties = properties
self.SetIcon(get_cpa_icon())
if not sys.platform.startswith('win'):
# this is good for Mac, but on windows creates a (currently) unused icon in the system tray
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(get_cpa_icon(), 'CellProfiler Analyst 2.0')
else:
self.tbicon = None
self.SetName('CPA')
self.Center(wx.HORIZONTAL)
self.CreateStatusBar()
#
# Setup toolbar
#
tb = self.CreateToolBar(wx.TB_HORZ_TEXT | wx.TB_FLAT)
tb.SetToolBitmapSize((32, 32))
tb.SetSize((-1, 132))
tb.AddLabelTool(ID_CLASSIFIER,
'Classifier',
icons.classifier.ConvertToBitmap(),
shortHelp='Classifier',
longHelp='Launch Classifier')
tb.AddLabelTool(ID_PLATE_VIEWER,
'PlateViewer',
icons.platemapbrowser.ConvertToBitmap(),
shortHelp='Plate Viewer',
longHelp='Launch Plate Viewer')
tb.AddLabelTool(ID_TABLE_VIEWER,
'TableViewer',
icons.data_grid.ConvertToBitmap(),
shortHelp='Table Viewer',
longHelp='Launch TableViewer')
tb.AddLabelTool(ID_IMAGE_VIEWER,
'ImageViewer',
icons.image_viewer.ConvertToBitmap(),
shortHelp='Image Viewer',
longHelp='Launch ImageViewer')
tb.AddLabelTool(ID_SCATTER,
'ScatterPlot',
icons.scatter.ConvertToBitmap(),
shortHelp='Scatter Plot',
longHelp='Launch Scatter Plot')
tb.AddLabelTool(ID_HISTOGRAM,
'Histogram',
icons.histogram.ConvertToBitmap(),
shortHelp='Histogram',
longHelp='Launch Histogram')
tb.AddLabelTool(ID_DENSITY,
'DensityPlot',
icons.density.ConvertToBitmap(),
shortHelp='Density Plot',
longHelp='Launch Density Plot')
tb.AddLabelTool(ID_BOXPLOT,
'BoxPlot',
icons.boxplot.ConvertToBitmap(),
shortHelp='Box Plot',
longHelp='Launch Box Plot')
tb.Realize()
# TODO: IMG-1071 - The following was meant to resize based on the toolbar size but GetEffectiveMinSize breaks on Macs
#self.SetDimensions(-1, -1, tb.GetEffectiveMinSize().width, -1, wx.SIZE_USE_EXISTING)
#
# Setup menu items
#
self.SetMenuBar(wx.MenuBar())
fileMenu = wx.Menu()
savePropertiesMenuItem = fileMenu.Append(-1,
'Save properties\tCtrl+S',
help='Save the properties.')
## loadWorkspaceMenuItem = fileMenu.Append(-1, 'Load properties\tCtrl+O', help='Open another properties file.')
fileMenu.AppendSeparator()
saveWorkspaceMenuItem = fileMenu.Append(
-1,
'Save workspace\tCtrl+Shift+S',
help='Save the currently open plots and settings.')
loadWorkspaceMenuItem = fileMenu.Append(
-1,
'Load workspace\tCtrl+Shift+O',
help='Open plots saved in a previous workspace.')
fileMenu.AppendSeparator()
saveLogMenuItem = fileMenu.Append(
-1, 'Save log', help='Save the contents of the log window.')
fileMenu.AppendSeparator()
self.exitMenuItem = fileMenu.Append(wx.ID_EXIT,
'Exit\tCtrl+Q',
help='Exit classifier')
self.GetMenuBar().Append(fileMenu, 'File')
toolsMenu = wx.Menu()
classifierMenuItem = toolsMenu.Append(ID_CLASSIFIER,
'Classifier\tCtrl+Shift+C',
help='Launches Classifier.')
plateMapMenuItem = toolsMenu.Append(
ID_PLATE_VIEWER,
'Plate Viewer\tCtrl+Shift+P',
help='Launches the Plate Viewer tool.')
dataTableMenuItem = toolsMenu.Append(
ID_TABLE_VIEWER,
'Data Table\tCtrl+Shift+T',
help='Launches the Data Table tool.')
imageViewerMenuItem = toolsMenu.Append(
ID_IMAGE_VIEWER,
'Image Viewer\tCtrl+Shift+I',
help='Launches the ImageViewer tool.')
scatterMenuItem = toolsMenu.Append(
ID_SCATTER,
'Scatter Plot\tCtrl+Shift+A',
help='Launches the Scatter Plot tool.')
histogramMenuItem = toolsMenu.Append(
ID_HISTOGRAM,
'Histogram Plot\tCtrl+Shift+H',
help='Launches the Histogram Plot tool.')
densityMenuItem = toolsMenu.Append(
ID_DENSITY,
'Density Plot\tCtrl+Shift+D',
help='Launches the Density Plot tool.')
boxplotMenuItem = toolsMenu.Append(ID_BOXPLOT,
'Box Plot\tCtrl+Shift+B',
help='Launches the Box Plot tool.')
self.GetMenuBar().Append(toolsMenu, 'Tools')
logMenu = wx.Menu()
debugMenuItem = logMenu.AppendRadioItem(
-1,
'Debug\tCtrl+1',
help='Logging window will display debug-level messages.')
infoMenuItem = logMenu.AppendRadioItem(
-1,
'Info\tCtrl+2',
help='Logging window will display info-level messages.')
warnMenuItem = logMenu.AppendRadioItem(
-1,
'Warnings\tCtrl+3',
help='Logging window will display warning-level messages.')
errorMenuItem = logMenu.AppendRadioItem(
-1,
'Errors\tCtrl+4',
help='Logging window will display error-level messages.')
criticalMenuItem = logMenu.AppendRadioItem(
-1,
'Critical\tCtrl+5',
help='Logging window will only display critical messages.')
infoMenuItem.Check()
self.GetMenuBar().Append(logMenu, 'Logging')
advancedMenu = wx.Menu()
normalizeMenuItem = advancedMenu.Append(
-1,
'Launch feature normalization tool',
help=
'Launches a tool for generating normalized values for measurement columns in your tables.'
)
queryMenuItem = advancedMenu.Append(
-1,
'Launch SQL query tool',
help=
'Opens a tool for making SQL queries to the CPA database. Advanced users only.'
)
clearTableLinksMenuItem = advancedMenu.Append(
-1,
'Clear table linking information',
help=
'Removes the tables from your database that tell CPA how to link your tables.'
)
self.GetMenuBar().Append(advancedMenu, 'Advanced')
helpMenu = wx.Menu()
aboutMenuItem = helpMenu.Append(-1, text='About', help='About CPA 2.0')
self.GetMenuBar().Append(helpMenu, 'Help')
# console and logging
self.console = wx.TextCtrl(self,
-1,
'',
style=wx.TE_MULTILINE | wx.TE_READONLY)
self.console.SetFont(
wx.Font(10, wx.FONTFAMILY_DEFAULT, wx.FONTSTYLE_NORMAL,
wx.FONTWEIGHT_NORMAL))
self.console.SetBackgroundColour('#111111')
self.console.SetForegroundColour('#DDDDDD')
log_level = logging.DEBUG
self.logr = logging.getLogger()
self.set_log_level(log_level)
self.log_text = ''
def update(x):
self.log_text += x + '\n'
hdlr = FuncLog(update)
# hdlr.setFormatter(logging.Formatter('[%(levelname)s] %(message)s'))
# hdlr.setFormatter(logging.Formatter('%(levelname)s | %(name)s | %(message)s [@ %(asctime)s in %(filename)s:%(lineno)d]'))
self.logr.addHandler(hdlr)
# log_levels are 10,20,30,40,50
logMenu.GetMenuItems()[(log_level / 10) - 1].Check()
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.DEBUG),
debugMenuItem)
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.INFO),
infoMenuItem)
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.WARN),
warnMenuItem)
self.Bind(wx.EVT_MENU, lambda (_): self.set_log_level(logging.ERROR),
errorMenuItem)
self.Bind(wx.EVT_MENU, lambda
(_): self.set_log_level(logging.CRITICAL), criticalMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_properties, savePropertiesMenuItem)
self.Bind(wx.EVT_MENU, self.on_save_workspace, saveWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.on_load_workspace, loadWorkspaceMenuItem)
self.Bind(wx.EVT_MENU, self.save_log, saveLogMenuItem)
self.Bind(wx.EVT_MENU, self.launch_normalization_tool,
normalizeMenuItem)
self.Bind(wx.EVT_MENU, self.clear_link_tables, clearTableLinksMenuItem)
self.Bind(wx.EVT_MENU, self.launch_query_maker, queryMenuItem)
self.Bind(wx.EVT_MENU, self.on_show_about, aboutMenuItem)
self.Bind(wx.EVT_TOOL, self.launch_classifier, id=ID_CLASSIFIER)
self.Bind(wx.EVT_TOOL,
self.launch_plate_map_browser,
id=ID_PLATE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_table_viewer, id=ID_TABLE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_image_viewer, id=ID_IMAGE_VIEWER)
self.Bind(wx.EVT_TOOL, self.launch_scatter_plot, id=ID_SCATTER)
self.Bind(wx.EVT_TOOL, self.launch_histogram_plot, id=ID_HISTOGRAM)
self.Bind(wx.EVT_TOOL, self.launch_density_plot, id=ID_DENSITY)
self.Bind(wx.EVT_TOOL, self.launch_box_plot, id=ID_BOXPLOT)
self.Bind(wx.EVT_MENU, self.on_close, self.exitMenuItem)
self.Bind(wx.EVT_CLOSE, self.on_close)
self.Bind(wx.EVT_IDLE, self.on_idle)
def __init__(self, properties=None, parent=None, id=ID_IMAGE_GALLERY, **kwargs):
if properties is not None:
global p
p = properties
global db
db = dbconnect.DBConnect.getInstance()
wx.Frame.__init__(self, parent, id=id, title='CPA/ImageGallery - %s' % \
(os.path.basename(p._filename)), size=(800, 600), **kwargs)
if parent is None and not sys.platform.startswith('win'):
self.tbicon = wx.TaskBarIcon()
self.tbicon.SetIcon(icons.get_cpa_icon(), 'CPA/ImageGallery')
else:
self.SetIcon(icons.get_cpa_icon())
self.SetName('ImageGallery')
db.register_gui_parent(self)
global dm
dm = DataModel.getInstance()
if not p.is_initialized():
logging.critical('ImageGallery requires a properties file. Exiting.')
raise Exception('ImageGallery requires a properties file. Exiting.')
self.pmb = None
self.worker = None
self.trainingSet = None
self.classBins = []
self.binsCreated = 0
self.chMap = p.image_channel_colors[:]
self.toggleChMap = p.image_channel_colors[
:] # used to store previous color mappings when toggling colors on/off with ctrl+1,2,3...
self.brightness = 1.0
self.scale = 1.0
self.contrast = 'Linear'
self.defaultTSFileName = None
self.defaultModelFileName = None
self.lastScoringFilter = None
self.menuBar = wx.MenuBar()
self.SetMenuBar(self.menuBar)
self.CreateMenus()
self.CreateStatusBar()
#### Create GUI elements
# Top level - three split windows
self.splitter = wx.SplitterWindow(self, style=wx.NO_BORDER | wx.SP_3DSASH)
self.fetch_and_rules_panel = wx.Panel(self.splitter)
self.bins_splitter = wx.SplitterWindow(self.splitter, style=wx.NO_BORDER | wx.SP_3DSASH)
# fetch & rules
self.fetch_panel = wx.Panel(self.fetch_and_rules_panel)
self.find_rules_panel = wx.Panel(self.fetch_and_rules_panel)
# sorting bins
self.gallery_panel = wx.Panel(self.bins_splitter)
o_label = p.object_name[0] if p.classification_type == 'image' else '' + ' image gallery'
self.gallery_box = wx.StaticBox(self.gallery_panel, label=o_label)
self.gallery_sizer = wx.StaticBoxSizer(self.gallery_box, wx.VERTICAL)
self.galleryBin = sortbin.SortBin(parent=self.gallery_panel,
classifier=self,
label='image gallery',
parentSizer=self.gallery_sizer)
self.gallery_sizer.Add(self.galleryBin, proportion=1, flag=wx.EXPAND)
self.gallery_panel.SetSizer(self.gallery_sizer)
self.objects_bin_panel = wx.Panel(self.bins_splitter)
# fetch objects interface
self.startId = wx.TextCtrl(self.fetch_panel, id=-1, value='1', size=(60, -1), style=wx.TE_PROCESS_ENTER)
self.endId = wx.TextCtrl(self.fetch_panel, id=-1, value='100', size=(60, -1), style=wx.TE_PROCESS_ENTER)
self.fetchChoice = wx.Choice(self.fetch_panel, id=-1, choices=['range','all','individual'])
self.fetchChoice.SetSelection(0)
self.filterChoice = wx.Choice(self.fetch_panel, id=-1,
choices=['experiment'] + p._filters_ordered + p._groups_ordered + [
CREATE_NEW_FILTER])
self.fetchFromGroupSizer = wx.BoxSizer(wx.HORIZONTAL)
self.fetchBtn = wx.Button(self.fetch_panel, -1, 'Fetch!')
#### Create Sizers
self.fetchSizer = wx.BoxSizer(wx.HORIZONTAL)
self.find_rules_sizer = wx.BoxSizer(wx.HORIZONTAL)
self.fetch_and_rules_sizer = wx.BoxSizer(wx.VERTICAL)
self.classified_bins_sizer = wx.BoxSizer(wx.HORIZONTAL)
#### Add elements to sizers and splitters
# fetch panel
self.fetchSizer.AddStretchSpacer()
self.fetchSizer.Add(wx.StaticText(self.fetch_panel, -1, 'Fetch '), flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchSizer.Add(self.fetchChoice, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchTxt = wx.StaticText(self.fetch_panel, -1, label='of image IDs:')
self.fetchSizer.Add(self.fetchTxt, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchSizer.Add(self.startId, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchTxt2 = wx.StaticText(self.fetch_panel, -1, label='to')
self.fetchSizer.Add(self.fetchTxt2, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchSizer.Add(self.endId, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
#self.fetchSizer.Add(self.obClassChoice, flag=wx.ALIGN_CENTER_VERTICAL)
#self.fetchSizer.AddSpacer((5, 20))
self.fetchTxt3 = wx.StaticText(self.fetch_panel, -1, label='images')
self.fetchSizer.Add(self.fetchTxt3, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchSizer.Add(wx.StaticText(self.fetch_panel, -1, 'from'), flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchSizer.Add(self.filterChoice, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((10, 20))
self.fetchSizer.Add(self.fetchFromGroupSizer, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddSpacer((5, 20))
self.fetchSizer.Add(self.fetchBtn, flag=wx.ALIGN_CENTER_VERTICAL)
self.fetchSizer.AddStretchSpacer()
self.fetch_panel.SetSizerAndFit(self.fetchSizer)
# fetch and rules panel
self.fetch_and_rules_sizer.Add((5, 5))
self.fetch_and_rules_sizer.Add(self.fetch_panel, flag=wx.EXPAND)
self.fetch_and_rules_sizer.Add((5, 5))
self.fetch_and_rules_panel.SetSizerAndFit(self.fetch_and_rules_sizer)
# classified bins panel
self.objects_bin_panel.SetSizer(self.classified_bins_sizer)
# splitter windows
self.splitter.SplitHorizontally(self.fetch_and_rules_panel, self.bins_splitter,
self.fetch_and_rules_panel.GetMinSize()[1])
self.bins_splitter.SplitHorizontally(self.gallery_panel, self.objects_bin_panel)
self.splitter.SetSashGravity(0.0)
self.bins_splitter.SetSashGravity(0.5)
self.splitter.SetMinimumPaneSize(max(50, self.fetch_and_rules_panel.GetMinHeight()))
self.bins_splitter.SetMinimumPaneSize(50)
self.SetMinSize((self.fetch_and_rules_panel.GetMinWidth(), 4 * 50 + self.fetch_and_rules_panel.GetMinHeight()))
# Set initial state
self.filterChoice.SetSelection(0)
# JEN - Start Add
# self.openDimensReduxBtn.Disable()
# JEN - End Add
self.fetchSizer.Hide(self.fetchFromGroupSizer)
#####################
#### GUI Section ####
#####################
# add the default classes
#for class in range(1, num_classes+1):
self.AddSortClass('objects of selected image')
#self.AddSortClass('negative')
self.Layout()
self.Center()
self.MapChannels(p.image_channel_colors[:])
self.BindMouseOverHelpText()
#self.Bind(wx.EVT_BUTTON, self.OnInspect, self.inspectBtn)
# JEN - Start Add
# self.Bind(wx.EVT_BUTTON, self.OpenDimensRedux, self.openDimensReduxBtn)
# JEN - End Add
self.Bind(wx.EVT_BUTTON, self.OnFetch, self.fetchBtn)
self.startId.Bind(wx.EVT_TEXT, self.ValidateIntegerField)
self.startId.Bind(wx.EVT_TEXT_ENTER, self.OnFetch)
self.Bind(wx.EVT_CLOSE, self.OnClose)
self.Bind(wx.EVT_CHAR, self.OnKey) # Doesn't work for windows
tilecollection.EVT_TILE_UPDATED(self, self.OnTileUpdated)
self.Bind(sortbin.EVT_QUANTITY_CHANGED, self.QuantityChanged)
self.Bind(wx.EVT_CHOICE, self.OnSelectFetchChoice, self.fetchChoice)
self.Bind(wx.EVT_CHOICE, self.OnSelectFilter, self.filterChoice)
