def test_concordance_with_parameters(self):
"""Test concordance between two genotype arrays. Apply different parameters."""
concordance = istats.concordance(self.a, self.b, CALLED)
TestImputeStats.__assert_concordance_almost_equal(concordance, [0.45454545, 0.27272727])
concordance = istats.concordance(self.a, self.b, CALLED, samples=np.arange(90))
TestImputeStats.__assert_concordance_almost_equal(concordance, [0.5, 0.25])
concordance = istats.concordance(self.a, self.b, CALLED_AND_HAS_MINOR_ALLELE)
TestImputeStats.__assert_concordance_almost_equal(concordance, [0.36842105, 0.23809524])
def test_concordance_with_parameters(self):
'''Test concordance between two genotype arrays. Apply different parameters.'''
concordance = istats.concordance(self.a, self.b, CALLED)
TestImputeStats.__assert_concordance_almost_equal(
concordance, [0.45454545, 0.27272727])
concordance = istats.concordance(self.a,
self.b,
CALLED,
samples=np.arange(90))
TestImputeStats.__assert_concordance_almost_equal(
concordance, [0.5, 0.25])
concordance = istats.concordance(self.a, self.b,
CALLED_AND_HAS_MINOR_ALLELE)
TestImputeStats.__assert_concordance_almost_equal(
concordance, [0.36842105, 0.23809524])
def test_concordance_self(self):
'''Test concordance between two genotype arrays.'''
concordance = istats.concordance(self.a, self.a, CALLED)
TestImputeStats.__assert_concordance_almost_equal(
concordance, [1.0, 1.0])
def test_concordance_self(self):
"""Test concordance between two genotype arrays."""
concordance = istats.concordance(self.a, self.a, CALLED)
TestImputeStats.__assert_concordance_almost_equal(concordance, [1.0, 1.0])
