def test_bad_readmask_in_filter_fasta_file_limit_n(): ht = khmer.new_hashtable(4, 4**4) khmer.reset_reporting_callback() mmt = ht.fasta_file_to_minmax(reads_filename, N_READS) try: ht.filter_fasta_file_limit_n(mmt, 2, 2, "hi") assert 0 except TypeError: pass except: raise
def test_raise_in_filter_fasta_file_max(): ht = khmer.new_hashtable(4, 4**4) khmer.reset_reporting_callback() mmt = ht.fasta_file_to_minmax(reads_filename, N_READS) try: ht.filter_fasta_file_any(mmt, 2, None, callback_raise) assert 0 except GoodException: pass except: raise
def test_bad_readmask_in_filter_fasta_file_max(): ht = khmer.new_hashtable(4, 4**4) khmer.reset_reporting_callback() mmt = ht.fasta_file_to_minmax(reads_filename, N_READS) try: ht.filter_fasta_file_any(mmt, 2, "hi") assert 0 except TypeError: pass # expected except: raise
def test_raise_in_filter_fasta_file_max(): return ## @CTB ht = khmer.new_hashtable(4, 4**4) khmer.reset_reporting_callback() mmt = ht.fasta_file_to_minmax(reads_filename, N_READS) try: ht.filter_fasta_file_any(mmt, 2, None, callback_raise) assert 0 except GoodException: pass except: raise
def teardown(): khmer.reset_reporting_callback()