def __init__(self, region_number_to_name_bidict=None, name=None, metadata=None):
self.region_number_to_name_bidict = region_number_to_name_bidict
self._name = name or ObjectLabeller.getNextUnamedObjectName(MorphologyBase)
CheckValidName(self._name)
self.metadata = metadata if metadata else {}
def __init__(self, simulationresult, filename=None, keyTraceSets = [], make_graphs=True ):
if not filename:
filename = ObjectLabeller.getNextUnamedObjectName(SimulationSummariser, prefix='SimulationSummary') + '.pdf'
self.simulationresult = simulationresult
self.simulation = simulationresult.simulation
self.make_graphs= make_graphs
self.elements = defaultdict(list)
self.keyTraceSets = keyTraceSets
self.reportlabconfig = ReportLabConfig()
# Do the Summarising:
self.summarise(filename)
def __init__(self, morphology, simulation, name= None, segmenter=None, initial_voltage=None, cell_tags = [], **kwargs):
from morphforge.simulation.core.segmentation.cellsegmenter import DefaultCellSegementer
self.simulation = simulation
self.name = name if name else ObjectLabeller.getNextUnamedObjectName(Cell, 'AnonCell_')
self.morphology = morphology
self.cellSegmenter = segmenter if segmenter else DefaultCellSegementer()
self.cellSegmenter.connectToCell(self)
self.biophysics = CellBiophysics()
self.initial_voltage = initial_voltage or unit("-51:mV")
self.cell_tags = cell_tags
if self.name:
self.cell_tags = self.cell_tags + [self.name]
def __init__(self, name=None, description=None, user_tags=None, **kwargs):
self.name = name if name else ObjectLabeller.getNextUnamedObjectName(objType=Recordable, prefix="AnonRec")
self.user_tags = user_tags if user_tags else []
self._description = description