def test_readpeaks(self): import msproteomicstoolslib.format.mzXMLreader as mzXMLReader reader = mzXMLReader.mzXMLReader(self.filename, True) scan = reader.read_scan(5, True) self.assertEqual( len(scan.peaks), 615) self.assertAlmostEqual( scan.peaks[0].int, 271.413513184) self.assertAlmostEqual( scan.peaks[0].mz, 350.3074646) self.assertAlmostEqual( scan.max_peak().int, 10638.6044922) self.assertAlmostEqual( scan.max_peak().mz, 390.929901123)
def test_readpeaks(self): import msproteomicstoolslib.format.mzXMLreader as mzXMLReader reader = mzXMLReader.mzXMLReader(self.filename, True) scan = reader.read_scan(5, True) self.assertEqual(len(scan.peaks), 615) self.assertAlmostEqual(scan.peaks[0].int, 271.413513184) self.assertAlmostEqual(scan.peaks[0].mz, 350.3074646) self.assertAlmostEqual(scan.max_peak().int, 10638.6044922) self.assertAlmostEqual(scan.max_peak().mz, 390.929901123)
def test_create_ms_rt_hashes(self): reader = mzXMLReader.mzXMLReader(self.filename, False) scans = reader.parse_scans() reader.create_ms_rt_hashes(scans)
def test_parse_scans(self): reader = mzXMLReader.mzXMLReader(self.filename, False) scans = reader.parse_scans(ms2Only=False)
def test_readscan(self): import msproteomicstoolslib.format.mzXMLreader as mzXMLReader reader = mzXMLReader.mzXMLReader(self.filename, True) scan = reader.read_scan(5)
def test_readfile(self): reader = mzXMLReader.mzXMLReader(self.filename, True)