def setup_recordingchannels(self):
params = {'testarg2': 'yes', 'testarg3': True}
self.rchan1 = RecordingChannel(index=10,
coordinate=[1.1, 1.5, 1.7] * pq.mm,
name='test',
description='tester 1',
file_origin='test.file',
testarg1=1,
**params)
self.rchan2 = RecordingChannel(index=100,
coordinate=[11., 15., 17.] * pq.mm,
name='test',
description='tester 2',
file_origin='test.file',
testarg1=1,
**params)
self.rchan1.annotate(testarg1=1.1, testarg0=[1, 2, 3])
self.rchan2.annotate(testarg11=1.1, testarg10=[1, 2, 3])
self.rchan1.analogsignals = self.sig1
self.rchan2.analogsignals = self.sig2
self.rchan1.irregularlysampledsignals = self.irsig1
self.rchan2.irregularlysampledsignals = self.irsig2
create_many_to_one_relationship(self.rchan1)
create_many_to_one_relationship(self.rchan2)
def setup_recordingchannels(self):
rchanname11 = 'chan 1 1'
rchanname12 = 'chan 1 2'
rchanname21 = 'chan 2 1'
rchanname22 = 'chan 2 2'
self.rchannames1 = [rchanname11, rchanname12]
self.rchannames2 = [rchanname21, rchanname22, rchanname11]
self.rchannames = [rchanname11, rchanname12, rchanname21, rchanname22]
rchan11 = RecordingChannel(name=rchanname11)
rchan12 = RecordingChannel(name=rchanname12)
rchan21 = RecordingChannel(name=rchanname21)
rchan22 = RecordingChannel(name=rchanname22)
rchan23 = RecordingChannel(name=rchanname11)
self.rchan1 = [rchan11, rchan12]
self.rchan2 = [rchan21, rchan22, rchan23]
self.rchan = [rchan11, rchan12, rchan21, rchan22]
def setup_recordingchannels(self):
params = {'testarg2': 'yes', 'testarg3': True}
self.rchan1 = RecordingChannel(index=10,
coordinate=[1.1, 1.5, 1.7]*pq.mm,
name='test', description='tester 1',
file_origin='test.file',
testarg1=1, **params)
self.rchan2 = RecordingChannel(index=100,
coordinate=[11., 15., 17.]*pq.mm,
name='test', description='tester 2',
file_origin='test.file',
testarg1=1, **params)
self.rchan1.annotate(testarg1=1.1, testarg0=[1, 2, 3])
self.rchan2.annotate(testarg11=1.1, testarg10=[1, 2, 3])
self.rchan1.analogsignals = self.sig1
self.rchan2.analogsignals = self.sig2
self.rchan1.irregularlysampledsignals = self.irsig1
self.rchan2.irregularlysampledsignals = self.irsig2
self.rchan1.create_many_to_one_relationship()
self.rchan2.create_many_to_one_relationship()
def setUp(self):
unitname11 = 'unit 1 1'
unitname12 = 'unit 1 2'
unitname21 = 'unit 2 1'
unitname22 = 'unit 2 2'
channame11 = 'chan 1 1'
channame12 = 'chan 1 2'
channame21 = 'chan 2 1'
channame22 = 'chan 2 2'
segname11 = 'seg 1 1'
segname12 = 'seg 1 2'
segname21 = 'seg 2 1'
segname22 = 'seg 2 2'
self.rcgname1 = 'rcg 1'
self.rcgname2 = 'rcg 2'
self.rcgnames = [self.rcgname1, self.rcgname2]
self.unitnames1 = [unitname11, unitname12]
self.unitnames2 = [unitname21, unitname22, unitname11]
self.unitnames = [unitname11, unitname12, unitname21, unitname22]
self.channames1 = [channame11, channame12]
self.channames2 = [channame21, channame22, channame11]
self.channames = [channame11, channame12, channame21, channame22]
self.segnames1 = [segname11, segname12]
self.segnames2 = [segname21, segname22, segname11]
self.segnames = [segname11, segname12, segname21, segname22]
unit11 = Unit(name=unitname11)
unit12 = Unit(name=unitname12)
unit21 = Unit(name=unitname21)
unit22 = Unit(name=unitname22)
unit23 = unit11
chan11 = RecordingChannel(name=channame11)
chan12 = RecordingChannel(name=channame12)
chan21 = RecordingChannel(name=channame21)
chan22 = RecordingChannel(name=channame22)
chan23 = chan11
seg11 = Segment(name=segname11)
seg12 = Segment(name=segname12)
seg21 = Segment(name=segname21)
seg22 = Segment(name=segname22)
seg23 = seg11
self.units1 = [unit11, unit12]
self.units2 = [unit21, unit22, unit23]
self.units = [unit11, unit12, unit21, unit22]
self.chan1 = [chan11, chan12]
self.chan2 = [chan21, chan22, chan23]
self.chan = [chan11, chan12, chan21, chan22]
self.seg1 = [seg11, seg12]
self.seg2 = [seg21, seg22, seg23]
self.seg = [seg11, seg12, seg21, seg22]
self.rcg1 = RecordingChannelGroup(name=self.rcgname1)
self.rcg2 = RecordingChannelGroup(name=self.rcgname2)
self.rcg = [self.rcg1, self.rcg2]
self.rcg1.units = self.units1
self.rcg2.units = self.units2
self.rcg1.recordingchannels = self.chan1
self.rcg2.recordingchannels = self.chan2
class TestRecordingChannel(unittest.TestCase):
def setUp(self):
self.setup_analogsignals()
self.setup_irregularlysampledsignals()
self.setup_recordingchannels()
def setup_recordingchannels(self):
params = {'testarg2': 'yes', 'testarg3': True}
self.rchan1 = RecordingChannel(index=10,
coordinate=[1.1, 1.5, 1.7] * pq.mm,
name='test',
description='tester 1',
file_origin='test.file',
testarg1=1,
**params)
self.rchan2 = RecordingChannel(index=100,
coordinate=[11., 15., 17.] * pq.mm,
name='test',
description='tester 2',
file_origin='test.file',
testarg1=1,
**params)
self.rchan1.annotate(testarg1=1.1, testarg0=[1, 2, 3])
self.rchan2.annotate(testarg11=1.1, testarg10=[1, 2, 3])
self.rchan1.analogsignals = self.sig1
self.rchan2.analogsignals = self.sig2
self.rchan1.irregularlysampledsignals = self.irsig1
self.rchan2.irregularlysampledsignals = self.irsig2
create_many_to_one_relationship(self.rchan1)
create_many_to_one_relationship(self.rchan2)
def setup_analogsignals(self):
signame11 = 'analogsignal 1 1'
signame12 = 'analogsignal 1 2'
signame21 = 'analogsignal 2 1'
signame22 = 'analogsignal 2 2'
sigdata11 = np.arange(0, 10) * pq.mV
sigdata12 = np.arange(10, 20) * pq.mV
sigdata21 = np.arange(20, 30) * pq.V
sigdata22 = np.arange(30, 40) * pq.V
self.signames1 = [signame11, signame12]
self.signames2 = [signame21, signame22]
self.signames = [signame11, signame12, signame21, signame22]
sig11 = AnalogSignal(sigdata11,
name=signame11,
sampling_rate=1 * pq.Hz)
sig12 = AnalogSignal(sigdata12,
name=signame12,
sampling_rate=1 * pq.Hz)
sig21 = AnalogSignal(sigdata21,
name=signame21,
sampling_rate=1 * pq.Hz)
sig22 = AnalogSignal(sigdata22,
name=signame22,
sampling_rate=1 * pq.Hz)
self.sig1 = [sig11, sig12]
self.sig2 = [sig21, sig22]
self.sig = [sig11, sig12, sig21, sig22]
def setup_irregularlysampledsignals(self):
irsigname11 = 'irregularsignal 1 1'
irsigname12 = 'irregularsignal 1 2'
irsigname21 = 'irregularsignal 2 1'
irsigname22 = 'irregularsignal 2 2'
irsigdata11 = np.arange(0, 10) * pq.mA
irsigdata12 = np.arange(10, 20) * pq.mA
irsigdata21 = np.arange(20, 30) * pq.A
irsigdata22 = np.arange(30, 40) * pq.A
irsigtimes11 = np.arange(0, 10) * pq.ms
irsigtimes12 = np.arange(10, 20) * pq.ms
irsigtimes21 = np.arange(20, 30) * pq.s
irsigtimes22 = np.arange(30, 40) * pq.s
self.irsignames1 = [irsigname11, irsigname12]
self.irsignames2 = [irsigname21, irsigname22]
self.irsignames = [irsigname11, irsigname12, irsigname21, irsigname22]
irsig11 = IrregularlySampledSignal(irsigtimes11,
irsigdata11,
name=irsigname11)
irsig12 = IrregularlySampledSignal(irsigtimes12,
irsigdata12,
name=irsigname12)
irsig21 = IrregularlySampledSignal(irsigtimes21,
irsigdata21,
name=irsigname21)
irsig22 = IrregularlySampledSignal(irsigtimes22,
irsigdata22,
name=irsigname22)
self.irsig1 = [irsig11, irsig12]
self.irsig2 = [irsig21, irsig22]
self.irsig = [irsig11, irsig12, irsig21, irsig22]
def test_recordingchannel_creation(self):
assert_neo_object_is_compliant(self.rchan1)
assert_neo_object_is_compliant(self.rchan2)
self.assertEqual(self.rchan1.index, 10)
self.assertEqual(self.rchan2.index, 100)
assert_arrays_equal(self.rchan1.coordinate, [1.1, 1.5, 1.7] * pq.mm)
assert_arrays_equal(self.rchan2.coordinate, [11., 15., 17.] * pq.mm)
self.assertEqual(self.rchan1.name, 'test')
self.assertEqual(self.rchan2.name, 'test')
self.assertEqual(self.rchan1.description, 'tester 1')
self.assertEqual(self.rchan2.description, 'tester 2')
self.assertEqual(self.rchan1.file_origin, 'test.file')
self.assertEqual(self.rchan2.file_origin, 'test.file')
self.assertEqual(self.rchan1.annotations['testarg0'], [1, 2, 3])
self.assertEqual(self.rchan2.annotations['testarg10'], [1, 2, 3])
self.assertEqual(self.rchan1.annotations['testarg1'], 1.1)
self.assertEqual(self.rchan2.annotations['testarg1'], 1)
self.assertEqual(self.rchan2.annotations['testarg11'], 1.1)
self.assertEqual(self.rchan1.annotations['testarg2'], 'yes')
self.assertEqual(self.rchan2.annotations['testarg2'], 'yes')
self.assertTrue(self.rchan1.annotations['testarg3'])
self.assertTrue(self.rchan2.annotations['testarg3'])
self.assertTrue(hasattr(self.rchan1, 'analogsignals'))
self.assertTrue(hasattr(self.rchan2, 'analogsignals'))
self.assertEqual(len(self.rchan1.analogsignals), 2)
self.assertEqual(len(self.rchan2.analogsignals), 2)
for res, targ in zip(self.rchan1.analogsignals, self.sig1):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
for res, targ in zip(self.rchan2.analogsignals, self.sig2):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
self.assertTrue(hasattr(self.rchan1, 'irregularlysampledsignals'))
self.assertTrue(hasattr(self.rchan2, 'irregularlysampledsignals'))
self.assertEqual(len(self.rchan1.irregularlysampledsignals), 2)
self.assertEqual(len(self.rchan2.irregularlysampledsignals), 2)
for res, targ in zip(self.rchan1.irregularlysampledsignals,
self.irsig1):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
for res, targ in zip(self.rchan2.irregularlysampledsignals,
self.irsig2):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
self.assertTrue(hasattr(self.rchan1, 'recordingchannelgroups'))
self.assertTrue(hasattr(self.rchan2, 'recordingchannelgroups'))
def test_recordingchannel_merge(self):
self.rchan1.merge(self.rchan2)
sigres1 = [sig.name for sig in self.rchan1.analogsignals]
sigres2 = [sig.name for sig in self.rchan2.analogsignals]
irsigres1 = [sig.name for sig in self.rchan1.irregularlysampledsignals]
irsigres2 = [sig.name for sig in self.rchan2.irregularlysampledsignals]
self.assertEqual(sigres1, self.signames)
self.assertEqual(sigres2, self.signames2)
self.assertEqual(irsigres1, self.irsignames)
self.assertEqual(irsigres2, self.irsignames2)
for res, targ in zip(self.rchan1.analogsignals, self.sig):
assert_arrays_equal(res, targ)
for res, targ in zip(self.rchan2.analogsignals, self.sig2):
assert_arrays_equal(res, targ)
for res, targ in zip(self.rchan1.irregularlysampledsignals,
self.irsig):
assert_arrays_equal(res, targ)
for res, targ in zip(self.rchan2.irregularlysampledsignals,
self.irsig2):
assert_arrays_equal(res, targ)
class TestRecordingChannel(unittest.TestCase):
def setUp(self):
self.setup_analogsignals()
self.setup_irregularlysampledsignals()
self.setup_recordingchannels()
def setup_recordingchannels(self):
params = {'testarg2': 'yes', 'testarg3': True}
self.rchan1 = RecordingChannel(index=10,
coordinate=[1.1, 1.5, 1.7]*pq.mm,
name='test', description='tester 1',
file_origin='test.file',
testarg1=1, **params)
self.rchan2 = RecordingChannel(index=100,
coordinate=[11., 15., 17.]*pq.mm,
name='test', description='tester 2',
file_origin='test.file',
testarg1=1, **params)
self.rchan1.annotate(testarg1=1.1, testarg0=[1, 2, 3])
self.rchan2.annotate(testarg11=1.1, testarg10=[1, 2, 3])
self.rchan1.analogsignals = self.sig1
self.rchan2.analogsignals = self.sig2
self.rchan1.irregularlysampledsignals = self.irsig1
self.rchan2.irregularlysampledsignals = self.irsig2
self.rchan1.create_many_to_one_relationship()
self.rchan2.create_many_to_one_relationship()
def setup_analogsignals(self):
signame11 = 'analogsignal 1 1'
signame12 = 'analogsignal 1 2'
signame21 = 'analogsignal 2 1'
signame22 = 'analogsignal 2 2'
sigdata11 = np.arange(0, 10) * pq.mV
sigdata12 = np.arange(10, 20) * pq.mV
sigdata21 = np.arange(20, 30) * pq.V
sigdata22 = np.arange(30, 40) * pq.V
self.signames1 = [signame11, signame12]
self.signames2 = [signame21, signame22]
self.signames = [signame11, signame12, signame21, signame22]
sig11 = AnalogSignal(sigdata11, name=signame11, sampling_rate=1*pq.Hz)
sig12 = AnalogSignal(sigdata12, name=signame12, sampling_rate=1*pq.Hz)
sig21 = AnalogSignal(sigdata21, name=signame21, sampling_rate=1*pq.Hz)
sig22 = AnalogSignal(sigdata22, name=signame22, sampling_rate=1*pq.Hz)
self.sig1 = [sig11, sig12]
self.sig2 = [sig21, sig22]
self.sig = [sig11, sig12, sig21, sig22]
def setup_irregularlysampledsignals(self):
irsigname11 = 'irregularsignal 1 1'
irsigname12 = 'irregularsignal 1 2'
irsigname21 = 'irregularsignal 2 1'
irsigname22 = 'irregularsignal 2 2'
irsigdata11 = np.arange(0, 10) * pq.mA
irsigdata12 = np.arange(10, 20) * pq.mA
irsigdata21 = np.arange(20, 30) * pq.A
irsigdata22 = np.arange(30, 40) * pq.A
irsigtimes11 = np.arange(0, 10) * pq.ms
irsigtimes12 = np.arange(10, 20) * pq.ms
irsigtimes21 = np.arange(20, 30) * pq.s
irsigtimes22 = np.arange(30, 40) * pq.s
self.irsignames1 = [irsigname11, irsigname12]
self.irsignames2 = [irsigname21, irsigname22]
self.irsignames = [irsigname11, irsigname12, irsigname21, irsigname22]
irsig11 = IrregularlySampledSignal(irsigtimes11, irsigdata11,
name=irsigname11)
irsig12 = IrregularlySampledSignal(irsigtimes12, irsigdata12,
name=irsigname12)
irsig21 = IrregularlySampledSignal(irsigtimes21, irsigdata21,
name=irsigname21)
irsig22 = IrregularlySampledSignal(irsigtimes22, irsigdata22,
name=irsigname22)
self.irsig1 = [irsig11, irsig12]
self.irsig2 = [irsig21, irsig22]
self.irsig = [irsig11, irsig12, irsig21, irsig22]
def test_recordingchannel_creation(self):
assert_neo_object_is_compliant(self.rchan1)
assert_neo_object_is_compliant(self.rchan2)
self.assertEqual(self.rchan1.index, 10)
self.assertEqual(self.rchan2.index, 100)
assert_arrays_equal(self.rchan1.coordinate, [1.1, 1.5, 1.7]*pq.mm)
assert_arrays_equal(self.rchan2.coordinate, [11., 15., 17.]*pq.mm)
self.assertEqual(self.rchan1.name, 'test')
self.assertEqual(self.rchan2.name, 'test')
self.assertEqual(self.rchan1.description, 'tester 1')
self.assertEqual(self.rchan2.description, 'tester 2')
self.assertEqual(self.rchan1.file_origin, 'test.file')
self.assertEqual(self.rchan2.file_origin, 'test.file')
self.assertEqual(self.rchan1.annotations['testarg0'], [1, 2, 3])
self.assertEqual(self.rchan2.annotations['testarg10'], [1, 2, 3])
self.assertEqual(self.rchan1.annotations['testarg1'], 1.1)
self.assertEqual(self.rchan2.annotations['testarg1'], 1)
self.assertEqual(self.rchan2.annotations['testarg11'], 1.1)
self.assertEqual(self.rchan1.annotations['testarg2'], 'yes')
self.assertEqual(self.rchan2.annotations['testarg2'], 'yes')
self.assertTrue(self.rchan1.annotations['testarg3'])
self.assertTrue(self.rchan2.annotations['testarg3'])
self.assertTrue(hasattr(self.rchan1, 'analogsignals'))
self.assertTrue(hasattr(self.rchan2, 'analogsignals'))
self.assertEqual(len(self.rchan1.analogsignals), 2)
self.assertEqual(len(self.rchan2.analogsignals), 2)
for res, targ in zip(self.rchan1.analogsignals, self.sig1):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
for res, targ in zip(self.rchan2.analogsignals, self.sig2):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
self.assertTrue(hasattr(self.rchan1, 'irregularlysampledsignals'))
self.assertTrue(hasattr(self.rchan2, 'irregularlysampledsignals'))
self.assertEqual(len(self.rchan1.irregularlysampledsignals), 2)
self.assertEqual(len(self.rchan2.irregularlysampledsignals), 2)
for res, targ in zip(self.rchan1.irregularlysampledsignals,
self.irsig1):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
for res, targ in zip(self.rchan2.irregularlysampledsignals,
self.irsig2):
assert_arrays_equal(res, targ)
self.assertEqual(res.name, targ.name)
self.assertTrue(hasattr(self.rchan1, 'recordingchannelgroups'))
self.assertTrue(hasattr(self.rchan2, 'recordingchannelgroups'))
def test_recordingchannel_merge(self):
self.rchan1.merge(self.rchan2)
sigres1 = [sig.name for sig in self.rchan1.analogsignals]
sigres2 = [sig.name for sig in self.rchan2.analogsignals]
irsigres1 = [sig.name for sig in self.rchan1.irregularlysampledsignals]
irsigres2 = [sig.name for sig in self.rchan2.irregularlysampledsignals]
self.assertEqual(sigres1, self.signames)
self.assertEqual(sigres2, self.signames2)
self.assertEqual(irsigres1, self.irsignames)
self.assertEqual(irsigres2, self.irsignames2)
for res, targ in zip(self.rchan1.analogsignals, self.sig):
assert_arrays_equal(res, targ)
for res, targ in zip(self.rchan2.analogsignals, self.sig2):
assert_arrays_equal(res, targ)
for res, targ in zip(self.rchan1.irregularlysampledsignals,
self.irsig):
assert_arrays_equal(res, targ)
for res, targ in zip(self.rchan2.irregularlysampledsignals,
self.irsig2):
assert_arrays_equal(res, targ)
def test__children(self):
rcg = RecordingChannelGroup(name='rcg1')
rcg.recordingchannels = [self.rchan1]
rcg.create_many_to_many_relationship()
self.assertEqual(self.rchan1._container_child_objects, ())
self.assertEqual(self.rchan1._data_child_objects,
('AnalogSignal', 'IrregularlySampledSignal'))
self.assertEqual(self.rchan1._single_parent_objects, ())
self.assertEqual(self.rchan1._multi_child_objects, ())
self.assertEqual(self.rchan1._multi_parent_objects,
('RecordingChannelGroup',))
self.assertEqual(self.rchan1._child_properties, ())
self.assertEqual(self.rchan1._single_child_objects,
('AnalogSignal', 'IrregularlySampledSignal'))
self.assertEqual(self.rchan1._container_child_containers, ())
self.assertEqual(self.rchan1._data_child_containers,
('analogsignals', 'irregularlysampledsignals',))
self.assertEqual(self.rchan1._single_child_containers,
('analogsignals', 'irregularlysampledsignals',))
self.assertEqual(self.rchan1._single_parent_containers, ())
self.assertEqual(self.rchan1._multi_child_containers, ())
self.assertEqual(self.rchan1._multi_parent_containers,
('recordingchannelgroups',))
self.assertEqual(self.rchan1._child_objects,
('AnalogSignal', 'IrregularlySampledSignal'))
self.assertEqual(self.rchan1._child_containers,
('analogsignals', 'irregularlysampledsignals',))
self.assertEqual(self.rchan1._parent_objects,
('RecordingChannelGroup',))
self.assertEqual(self.rchan1._parent_containers,
('recordingchannelgroups',))
self.assertEqual(len(self.rchan1.children),
len(self.sig1) + len(self.irsig1))
self.assertEqual(self.rchan1.children[0].name, self.signames1[0])
self.assertEqual(self.rchan1.children[1].name, self.signames1[1])
self.assertEqual(self.rchan1.children[2].name, self.irsignames1[0])
self.assertEqual(self.rchan1.children[3].name, self.irsignames1[1])
self.assertEqual(len(self.rchan1.parents), 1)
self.assertEqual(self.rchan1.parents[0].name, 'rcg1')
self.rchan1.create_many_to_one_relationship()
self.rchan1.create_many_to_many_relationship()
self.rchan1.create_relationship()
assert_neo_object_is_compliant(self.rchan1)