def make_filter_box(self): filter_box = QtWidgets.QWidget() layout = QtWidgets.QGridLayout() layout.setSpacing(10) prefix_label = QtWidgets.QLabel('File Prefix') self.prefix_box = QtWidgets.QLineEdit() self.prefix_box.editingFinished.connect(self.set_range) extension_label = QtWidgets.QLabel('File Extension') self.extension_box = QtWidgets.QLineEdit() self.extension_box.editingFinished.connect(self.set_extension) suffix_label = QtWidgets.QLabel('File Suffix') self.suffix_box = QtWidgets.QLineEdit('') self.suffix_box.editingFinished.connect(self.get_prefixes) layout.addWidget(prefix_label, 0, 0) layout.addWidget(self.prefix_box, 0, 1) layout.addWidget(extension_label, 0, 2) layout.addWidget(self.extension_box, 0, 3) layout.addWidget(suffix_label, 0, 4) layout.addWidget(self.suffix_box, 0, 5) self.prefix_combo = QtWidgets.QComboBox() self.prefix_combo.setSizeAdjustPolicy( QtWidgets.QComboBox.AdjustToContents) self.prefix_combo.activated.connect(self.choose_prefix) self.extension_combo = QtWidgets.QComboBox() self.extension_combo.setSizeAdjustPolicy( QtWidgets.QComboBox.AdjustToContents) self.extension_combo.activated.connect(self.choose_extension) layout.addWidget(self.prefix_combo, 1, 1, alignment=QtCore.Qt.AlignHCenter) layout.addWidget(self.extension_combo, 1, 3, alignment=QtCore.Qt.AlignHCenter) filter_box.setLayout(layout) filter_box.setVisible(False) return filter_box
def __init__(self, parent=None): super(ImportDialog, self).__init__(parent) self.file_type = None layout = QtWidgets.QVBoxLayout() layout.addLayout(self.filebox()) title_layout = QtWidgets.QHBoxLayout() title_label = QtWidgets.QLabel('Title') self.title_box = QtWidgets.QLineEdit() title_layout.addWidget(title_label) title_layout.addWidget(self.title_box) layout.addLayout(title_layout) energy_layout = QtWidgets.QHBoxLayout() energy_label = QtWidgets.QLabel('Incident Energy') self.energy_box = QtWidgets.QLineEdit() self.energy_box.setFixedWidth(150) energy_layout.addWidget(energy_label) energy_layout.addWidget(self.energy_box) energy_layout.addStretch() layout.addLayout(energy_layout) step_layout = QtWidgets.QHBoxLayout() Q_label = QtWidgets.QLabel('dQ') self.Q_box = QtWidgets.QLineEdit() self.Q_box.setFixedWidth(75) E_label = QtWidgets.QLabel('dE') self.E_box = QtWidgets.QLineEdit() self.E_box.setFixedWidth(75) self.convert_box = QtWidgets.QCheckBox('Convert to S(Q,E)') self.convert_box.setChecked(False) step_layout.addWidget(self.convert_box) step_layout.addStretch() step_layout.addWidget(Q_label) step_layout.addWidget(self.Q_box) step_layout.addWidget(E_label) step_layout.addWidget(self.E_box) step_layout.addStretch() layout.addLayout(step_layout) layout.addWidget(self.close_buttons()) self.setLayout(layout) self.setWindowTitle("Import " + str(filetype))
def __init__(self, parent=None): super(FindDialog, self).__init__(parent) self.select_entry(self.choose_entry) self.parameters = GridParameters() self.parameters.add('threshold', '', 'Threshold') self.parameters.add('first', '', 'First Frame') self.parameters.add('last', '', 'Last Frame') find_layout = QtWidgets.QHBoxLayout() self.find_button = QtWidgets.QPushButton('Find Peaks') self.find_button.clicked.connect(self.find_peaks) self.peak_count = QtWidgets.QLabel() self.peak_count.setVisible(False) find_layout.addStretch() find_layout.addWidget(self.find_button) find_layout.addWidget(self.peak_count) find_layout.addStretch() self.set_layout(self.entry_layout, self.parameters.grid(), find_layout, self.progress_layout(save=True)) self.progress_bar.setVisible(False) self.progress_bar.setValue(0) self.set_title('Find Peaks') self.reduce = None
def scanbox(self): '''create widgets for specifying scan range to import''' scanminlabel = QtWidgets.QLabel("Min. Scan") self.scanmin = QtWidgets.QLineEdit() self.scanmin.setFixedWidth(100) self.scanmin.setAlignment(QtCore.Qt.AlignRight) scanmaxlabel = QtWidgets.QLabel("Max. Scan") self.scanmax = QtWidgets.QLineEdit() self.scanmax.setFixedWidth(100) self.scanmax.setAlignment(QtCore.Qt.AlignRight) scanbox = QtWidgets.QHBoxLayout() scanbox.addWidget(scanminlabel) scanbox.addWidget(self.scanmin) scanbox.addWidget(scanmaxlabel) scanbox.addWidget(self.scanmax) return scanbox
def make_rangebox(self): rangebox = QtWidgets.QWidget() layout = QtWidgets.QHBoxLayout() rangeminlabel = QtWidgets.QLabel("Min. index") self.rangemin = QtWidgets.QLineEdit() self.rangemin.setFixedWidth(150) self.rangemin.setAlignment(QtCore.Qt.AlignRight) rangemaxlabel = QtWidgets.QLabel("Max. index") self.rangemax = QtWidgets.QLineEdit() self.rangemax.setFixedWidth(150) self.rangemax.setAlignment(QtCore.Qt.AlignRight) layout.addWidget(rangeminlabel) layout.addWidget(self.rangemin) layout.addStretch() layout.addWidget(rangemaxlabel) layout.addWidget(self.rangemax) rangebox.setLayout(layout) rangebox.setVisible(False) return rangebox
def __init__(self, parent=None): super(OrientationDialog, self).__init__(parent) self.select_entry(self.choose_entry) self.refine = NXRefine(self.entry) self.refine.read_parameters() self.parameters = GridParameters() self.parameters.add('phi_start', self.refine.phi, 'Phi Start (deg)') self.parameters.add('phi_step', self.refine.phi_step, 'Phi Step (deg)') self.parameters.add('chi', self.refine.chi, 'Chi (deg)') self.parameters.add('omega', self.refine.omega, 'Omega (deg)') self.parameters.add('polar', self.refine.polar_max, 'Max. Polar Angle (deg)') self.parameters.add('polar_tolerance', self.refine.polar_tolerance, 'Polar Angle Tolerance') self.parameters.add('peak_tolerance', self.refine.peak_tolerance, 'Peak Angle Tolerance') action_buttons = self.action_buttons( ('Generate Grains', self.generate_grains), ('List Peaks', self.list_peaks)) self.grain_layout = QtWidgets.QHBoxLayout() self.grain_combo = QtWidgets.QComboBox() self.grain_combo.setSizeAdjustPolicy( QtWidgets.QComboBox.AdjustToContents) self.grain_combo.currentIndexChanged.connect(self.set_grain) self.grain_textbox = QtWidgets.QLabel() self.grain_layout.addWidget(self.grain_combo) self.grain_layout.addStretch() self.grain_layout.addWidget(self.grain_textbox) bottom_layout = QtWidgets.QHBoxLayout() self.result_textbox = QtWidgets.QLabel() bottom_layout.addWidget(self.result_textbox) bottom_layout.addStretch() bottom_layout.addWidget(self.close_buttons()) self.set_layout(self.entry_layout, self.parameters.grid(), action_buttons, bottom_layout) self.set_title('Defining Orientation')
def __init__(self, parent=None): super(TransformDialog, self).__init__(parent) self.select_entry(self.initialize_grid) self.refine = NXRefine() grid = QtWidgets.QGridLayout() grid.setSpacing(10) header_font = QtGui.QFont() header_font.setBold(True) start_label = QtWidgets.QLabel('Start') start_label.setFont(header_font) grid.addWidget(start_label, 0, 1) step_label = QtWidgets.QLabel('Step') step_label.setFont(header_font) grid.addWidget(step_label, 0, 2) stop_label = QtWidgets.QLabel('Stop') stop_label.setFont(header_font) grid.addWidget(stop_label, 0, 3) grid.addWidget(QtWidgets.QLabel('H:'), 1, 0) grid.addWidget(QtWidgets.QLabel('K:'), 2, 0) grid.addWidget(QtWidgets.QLabel('L:'), 3, 0) self.start_h_box = QtWidgets.QLineEdit() self.step_h_box = QtWidgets.QLineEdit() self.stop_h_box = QtWidgets.QLineEdit() grid.addWidget(self.start_h_box, 1, 1) grid.addWidget(self.step_h_box, 1, 2) grid.addWidget(self.stop_h_box, 1, 3) self.start_k_box = QtWidgets.QLineEdit() self.step_k_box = QtWidgets.QLineEdit() self.stop_k_box = QtWidgets.QLineEdit() grid.addWidget(self.start_k_box, 2, 1) grid.addWidget(self.step_k_box, 2, 2) grid.addWidget(self.stop_k_box, 2, 3) self.start_l_box = QtWidgets.QLineEdit() self.step_l_box = QtWidgets.QLineEdit() self.stop_l_box = QtWidgets.QLineEdit() grid.addWidget(self.start_l_box, 3, 1) grid.addWidget(self.step_l_box, 3, 2) grid.addWidget(self.stop_l_box, 3, 3) self.set_layout( self.entry_layout, grid, self.checkboxes( ('copy', 'Copy to all entries', True), ('mask', 'Create masked transform group', True), ('overwrite', 'Overwrite existing transforms', False)), self.close_buttons(save=True)) self.setWindowTitle('Transforming Data') try: self.initialize_grid() except Exception: pass
def __init__(self, parent=None): super(MaximumDialog, self).__init__(parent) self.select_entry(self.choose_entry) self.parameters = GridParameters() self.parameters.add('first', '', 'First Frame') self.parameters.add('last', '', 'Last Frame') self.output = QtWidgets.QLabel('Maximum Value:') self.set_layout( self.entry_layout, self.output, self.parameters.grid(), self.action_buttons(('Find Maximum', self.find_maximum)), self.progress_layout(save=True)) self.progress_bar.setVisible(False) self.progress_bar.setValue(0) self.set_title('Find Maximum Value') self.reduce = None
def __init__(self, parent=None): super(ImportDialog, self).__init__(parent) skippedbox = QtWidgets.QHBoxLayout() skippedlabel = QtWidgets.QLabel("No. of skipped rows") self.skiprows = QtWidgets.QLineEdit() self.skiprows.setText('0') self.skiprows.setFixedWidth(20) skippedbox.addWidget(skippedlabel) skippedbox.addWidget(self.skiprows) layout = QtWidgets.QVBoxLayout() layout.addLayout(self.filebox()) layout.addLayout(skippedbox) layout.addWidget(self.buttonbox()) self.setLayout(layout) self.setWindowTitle("Import "+str(filetype))
def list_peaks(self): if self.peaks_box is not None and self.table_model is not None: self.update_table() return self.peaks_box = BaseDialog(self) self.peaks_box.setMinimumWidth(600) self.peaks_box.setMinimumHeight(600) header = [ 'i', 'x', 'y', 'z', 'Polar', 'Azi', 'Intensity', 'H', 'K', 'L', 'Diff' ] peak_list = self.refine.get_peaks() self.refine.assign_rings() self.rings = self.refine.get_ring_hkls() orient_layout = QtWidgets.QHBoxLayout() if self.refine.primary is None: self.refine.primary = 0 if self.refine.secondary is None: self.refine.secondary = 1 self.primary_box = QtWidgets.QLineEdit(str(self.refine.primary)) self.primary_box.setAlignment(QtCore.Qt.AlignRight) self.primary_box.setFixedWidth(80) self.secondary_box = QtWidgets.QLineEdit(str(self.refine.secondary)) self.secondary_box.setAlignment(QtCore.Qt.AlignRight) self.secondary_box.setFixedWidth(80) orient_button = QtWidgets.QPushButton('Orient') orient_button.clicked.connect(self.orient) orient_layout.addStretch() orient_layout.addWidget(QtWidgets.QLabel('Primary')) orient_layout.addWidget(self.primary_box) orient_layout.addWidget(QtWidgets.QLabel('Secondary')) orient_layout.addWidget(self.secondary_box) orient_layout.addStretch() orient_layout.addWidget(orient_button) self.table_view = QtWidgets.QTableView() self.table_model = NXTableModel(self, peak_list, header) self.table_view.setModel(self.table_model) self.table_view.resizeColumnsToContents() self.table_view.horizontalHeader().stretchLastSection() self.table_view.setSelectionBehavior( QtWidgets.QAbstractItemView.SelectRows) self.table_view.doubleClicked.connect(self.plot_peak) self.table_view.setSortingEnabled(True) self.table_view.sortByColumn(0, QtCore.Qt.AscendingOrder) layout = QtWidgets.QVBoxLayout() layout.addLayout(orient_layout) layout.addWidget(self.table_view) close_layout = QtWidgets.QHBoxLayout() self.status_text = QtWidgets.QLabel('Score: %.4f' % self.refine.score()) self.tolerance_box = QtWidgets.QLineEdit(str( self.refine.hkl_tolerance)) self.tolerance_box.setAlignment(QtCore.Qt.AlignRight) self.tolerance_box.setMaxLength(5) self.tolerance_box.editingFinished.connect(self.update_table) self.tolerance_box.setFixedWidth(80) save_button = QtWidgets.QPushButton('Save Orientation') save_button.clicked.connect(self.save_orientation) close_button = QtWidgets.QPushButton('Close Window') close_button.clicked.connect(self.close_peaks_box) close_layout.addWidget(self.status_text) close_layout.addStretch() close_layout.addWidget(QtWidgets.QLabel('Threshold')) close_layout.addWidget(self.tolerance_box) close_layout.addStretch() close_layout.addWidget(save_button) close_layout.addStretch() close_layout.addWidget(close_button) layout.addLayout(close_layout) self.peaks_box.setLayout(layout) self.peaks_box.setWindowTitle('%s Peak Table' % self.entry.nxtitle) self.peaks_box.adjustSize() self.peaks_box.show() self.plotview = None
def update(self): if not self.sample_directory: raise NeXusError("No sample directory declared") if self.grid: self.delete_grid(self.grid) # Map from wrapper files to scan directories wrapper_files = { w: self.get_scan(w) for w in sorted([ os.path.join(self.sample_directory, filename) for filename in os.listdir(self.sample_directory) if self.is_valid(filename) ], key=natural_sort) } self.grid = QtWidgets.QGridLayout() self.insert_layout(2, self.grid) self.grid.setSpacing(1) row = 0 columns = [ 'Scan', 'data', 'link', 'max', 'find', 'copy', 'refine', 'transform', 'masked_transform', 'combine', 'masked_combine', 'pdf', 'overwrite', 'reduce', 'sync' ] header = {} for col, column in enumerate(columns): header[column] = QtWidgets.QLabel(column) header[column].setFont(self.bold_font) header[column].setFixedWidth(75) if column == 'transform' or column == 'combine': self.grid.addWidget(header[column], row, col, 1, 2, QtCore.Qt.AlignHCenter) elif 'masked' not in column: self.grid.addWidget(header[column], row, col) header[column].setAlignment(QtCore.Qt.AlignHCenter) row = 1 columns = ['regular', 'masked', 'regular', 'masked'] for col, column in enumerate(columns): header[column] = QtWidgets.QLabel(column) header[column].setFixedWidth(75) header[column].setAlignment(QtCore.Qt.AlignHCenter) self.grid.addWidget(header[column], row, col + 7) self.scans = {} self.scans_backup = {} # Create (unchecked) checkboxes for wrapper_file, scan in wrapper_files.items(): scan_label = os.path.basename(scan) row += 1 status = {} status['scan'] = QtWidgets.QLabel(scan_label) if self.parent_file == wrapper_file: status['scan'].setStyleSheet('font-weight:bold') status['data'] = self.new_checkbox() status['link'] = self.new_checkbox() status['max'] = self.new_checkbox() status['find'] = self.new_checkbox() status['copy'] = self.new_checkbox() status['refine'] = self.new_checkbox() status['transform'] = self.new_checkbox() status['masked_transform'] = self.new_checkbox() status['combine'] = self.new_checkbox() status['masked_combine'] = self.new_checkbox() status['pdf'] = self.new_checkbox() status['overwrite'] = self.new_checkbox(self.select_scans) status['reduce'] = self.new_checkbox(self.select_scans) status['sync'] = self.new_checkbox() self.grid.addWidget(status['scan'], row, 0, QtCore.Qt.AlignCenter) self.grid.addWidget(status['data'], row, 1, QtCore.Qt.AlignCenter) self.grid.addWidget(status['link'], row, 2, QtCore.Qt.AlignCenter) self.grid.addWidget(status['max'], row, 3, QtCore.Qt.AlignCenter) self.grid.addWidget(status['find'], row, 4, QtCore.Qt.AlignCenter) self.grid.addWidget(status['copy'], row, 5, QtCore.Qt.AlignCenter) self.grid.addWidget(status['refine'], row, 6, QtCore.Qt.AlignCenter) self.grid.addWidget(status['transform'], row, 7, QtCore.Qt.AlignCenter) self.grid.addWidget(status['masked_transform'], row, 8, QtCore.Qt.AlignCenter) self.grid.addWidget(status['combine'], row, 9, QtCore.Qt.AlignCenter) self.grid.addWidget(status['masked_combine'], row, 10, QtCore.Qt.AlignCenter) self.grid.addWidget(status['pdf'], row, 11, QtCore.Qt.AlignCenter) self.grid.addWidget(status['overwrite'], row, 12, QtCore.Qt.AlignCenter) self.grid.addWidget(status['reduce'], row, 13, QtCore.Qt.AlignCenter) self.grid.addWidget(status['sync'], row, 14, QtCore.Qt.AlignCenter) self.scans[scan] = status row += 1 self.grid.addWidget(QtWidgets.QLabel('All'), row, 0, QtCore.Qt.AlignCenter) all_boxes = {} all_boxes['link'] = self.new_checkbox( lambda: self.select_status('link')) all_boxes['max'] = self.new_checkbox(lambda: self.select_status('max')) all_boxes['find'] = self.new_checkbox( lambda: self.select_status('find')) all_boxes['copy'] = self.new_checkbox( lambda: self.select_status('copy')) all_boxes['refine'] = self.new_checkbox( lambda: self.select_status('refine')) all_boxes['transform'] = self.new_checkbox( lambda: self.select_status('transform')) all_boxes['masked_transform'] = self.new_checkbox( lambda: self.select_status('masked_transform')) all_boxes['combine'] = self.new_checkbox( lambda: self.select_status('combine')) all_boxes['masked_combine'] = self.new_checkbox( lambda: self.select_status('masked_combine')) all_boxes['pdf'] = self.new_checkbox(lambda: self.select_status('pdf')) all_boxes['overwrite'] = self.new_checkbox(self.select_all) all_boxes['reduce'] = self.new_checkbox(self.select_all) all_boxes['sync'] = self.new_checkbox(self.select_all) self.grid.addWidget(all_boxes['link'], row, 2, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['max'], row, 3, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['find'], row, 4, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['copy'], row, 5, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['refine'], row, 6, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['transform'], row, 7, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['masked_transform'], row, 8, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['combine'], row, 9, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['masked_combine'], row, 10, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['pdf'], row, 11, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['overwrite'], row, 12, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['reduce'], row, 13, QtCore.Qt.AlignCenter) self.grid.addWidget(all_boxes['sync'], row, 14, QtCore.Qt.AlignCenter) self.all_scans = all_boxes self.start_progress((0, len(wrapper_files))) # Populate the checkboxes based on the entries in nxdb.File for i, (wrapper, scan) in enumerate(wrapper_files.items()): status = self.scans[scan] status['data'].setEnabled(False) f = nxdb.get_file(wrapper) for task_name in nxdb.task_names: # Database columns use nx* names while columns don't if task_name.startswith('nx'): col_name = task_name[2:] else: col_name = task_name checkbox = status[col_name] file_status = getattr(f, task_name) if file_status == nxdb.DONE: checkbox.setCheckState(QtCore.Qt.Checked) checkbox.setEnabled(False) elif file_status == nxdb.IN_PROGRESS: checkbox.setCheckState(QtCore.Qt.PartiallyChecked) checkbox.setEnabled(True) elif file_status == nxdb.QUEUED: checkbox.setCheckState(QtCore.Qt.PartiallyChecked) checkbox.setEnabled(False) elif file_status == nxdb.FAILED: checkbox.setCheckState(QtCore.Qt.Unchecked) checkbox.setEnabled(True) # TODO: do i need to account for last? if status['data'].checkState() == QtCore.Qt.Unchecked: self.disable_status(status) self.update_progress(i) self.stop_progress() self.backup_scans() return self.grid
def list_orientations(self): message_box = BaseDialog(self) message_box.setMinimumWidth(600) message_box.setMinimumHeight(600) header = [ 'i', 'x', 'y', 'z', 'Polar', 'Azi', 'Intensity', 'H', 'K', 'L', 'Diff' ] peak_list = self.refine.get_peaks() self.refine.assign_rings() self.rings = self.refine.get_ring_hkls() orient_layout = QtWidgets.QHBoxLayout() if self.refine.primary is None: self.refine.primary = 0 if self.refine.secondary is None: self.refine.secondary = 1 self.primary_box = QtWidgets.QLineEdit(str(self.refine.primary)) self.primary_box.setAlignment(QtCore.Qt.AlignRight) self.primary_box.setFixedWidth(80) self.secondary_box = QtWidgets.QLineEdit(str(self.refine.secondary)) self.secondary_box.setAlignment(QtCore.Qt.AlignRight) self.secondary_box.setFixedWidth(80) orient_button = QtWidgets.QPushButton('Orient') orient_button.clicked.connect(self.orient) refine_button = QtWidgets.QPushButton('Refine') refine_button.clicked.connect(self.refine_orientation) restore_button = QtWidgets.QPushButton('Restore') restore_button.clicked.connect(self.restore_orientation) orient_layout.addStretch() orient_layout.addWidget(QtWidgets.QLabel('Primary')) orient_layout.addWidget(self.primary_box) orient_layout.addWidget(QtWidgets.QLabel('Secondary')) orient_layout.addWidget(self.secondary_box) orient_layout.addStretch() orient_layout.addWidget(orient_button) orient_layout.addWidget(refine_button) orient_layout.addWidget(restore_button) grid = QtWidgets.QGridLayout() grid.setSpacing(10) self.lattice = GridParameters() self.lattice.add('a', self.refine.a, 'a', False) self.lattice.add('b', self.refine.b, 'b', False) self.lattice.add('c', self.refine.c, 'c', False) self.lattice.add('alpha', self.refine.alpha, 'alpha', False) self.lattice.add('beta', self.refine.beta, 'beta', False) self.lattice.add('gamma', self.refine.gamma, 'gamma', False) p = self.lattice['a'] p.box.setFixedWidth(80) label, value, checkbox = p.label, p.value, p.vary grid.addWidget(p.label, 0, 0, QtCore.Qt.AlignRight) grid.addWidget(p.box, 0, 1, QtCore.Qt.AlignHCenter) grid.addWidget(p.checkbox, 0, 2, QtCore.Qt.AlignHCenter) p = self.lattice['b'] p.box.setFixedWidth(80) label, value, checkbox = p.label, p.value, p.vary grid.addWidget(p.label, 0, 3, QtCore.Qt.AlignRight) grid.addWidget(p.box, 0, 4, QtCore.Qt.AlignHCenter) grid.addWidget(p.checkbox, 0, 5, QtCore.Qt.AlignHCenter) p = self.lattice['c'] p.box.setFixedWidth(80) label, value, checkbox = p.label, p.value, p.vary grid.addWidget(p.label, 0, 6, QtCore.Qt.AlignRight) grid.addWidget(p.box, 0, 7, QtCore.Qt.AlignHCenter) grid.addWidget(p.checkbox, 0, 8, QtCore.Qt.AlignHCenter) p = self.lattice['alpha'] p.box.setFixedWidth(80) label, value, checkbox = p.label, p.value, p.vary grid.addWidget(p.label, 1, 0, QtCore.Qt.AlignRight) grid.addWidget(p.box, 1, 1, QtCore.Qt.AlignHCenter) grid.addWidget(p.checkbox, 1, 2, QtCore.Qt.AlignHCenter) p = self.lattice['beta'] p.box.setFixedWidth(80) label, value, checkbox = p.label, p.value, p.vary grid.addWidget(p.label, 1, 3, QtCore.Qt.AlignRight) grid.addWidget(p.box, 1, 4, QtCore.Qt.AlignHCenter) grid.addWidget(p.checkbox, 1, 5, QtCore.Qt.AlignHCenter) p = self.lattice['gamma'] p.box.setFixedWidth(80) label, value, checkbox = p.label, p.value, p.vary grid.addWidget(p.label, 1, 6, QtCore.Qt.AlignRight) grid.addWidget(p.box, 1, 7, QtCore.Qt.AlignHCenter) grid.addWidget(p.checkbox, 1, 8, QtCore.Qt.AlignHCenter) self.table_view = QtWidgets.QTableView() self.table_model = NXTableModel(self, peak_list, header) self.table_view.setModel(self.table_model) self.table_view.resizeColumnsToContents() self.table_view.horizontalHeader().stretchLastSection() self.table_view.setSelectionBehavior( QtWidgets.QAbstractItemView.SelectRows) self.table_view.doubleClicked.connect(self.plot_peak) self.table_view.setSortingEnabled(True) self.table_view.sortByColumn(0, QtCore.Qt.AscendingOrder) layout = QtWidgets.QVBoxLayout() layout.addLayout(orient_layout) layout.addLayout(grid) layout.addWidget(self.table_view) close_layout = QtWidgets.QHBoxLayout() self.status_text = QtWidgets.QLabel('Score: %.4f' % self.refine.score()) self.tolerance_box = QtWidgets.QLineEdit(str( self.refine.hkl_tolerance)) self.tolerance_box.setAlignment(QtCore.Qt.AlignRight) self.tolerance_box.setMaxLength(5) self.tolerance_box.editingFinished.connect(self.update_table) self.tolerance_box.setFixedWidth(80) save_button = QtWidgets.QPushButton('Save Orientation') save_button.clicked.connect(self.save_orientation) close_button = QtWidgets.QPushButton('Close Window') close_button.clicked.connect(message_box.close) close_layout.addWidget(self.status_text) close_layout.addStretch() close_layout.addWidget(QtWidgets.QLabel('Threshold')) close_layout.addWidget(self.tolerance_box) close_layout.addStretch() close_layout.addWidget(save_button) close_layout.addStretch() close_layout.addWidget(close_button) layout.addLayout(close_layout) message_box.setLayout(layout) message_box.setWindowTitle('%s Peak Table' % self.entry.nxtitle) message_box.adjustSize() message_box.show() self.plotview = None