def setUp(self):
self.path = os.path.join(TEST_DATA_DIR, 'chinook.xlsx')
self.wb = origins.connect('excel', path=self.path)
def setUp(self):
self.project = origins.connect(
"redcap-mysql", host=HOST, port=PORT, user=USER, password=PASSWORD, project="redcap_demo"
)
def test_explicit_depth(self):
d = origins.connect('directory', path=TEST_DATA_DIR, depth=1)
self.assertTrue([f for f in d.files if '/' in f['name']])
def setUp(self):
self.path = os.path.join(TEST_DATA_DIR, "chinook_tracks.csv")
self.f = origins.connect("delimited", path=self.path)
def setUp(self):
self.directory = origins.connect('directory', path=TEST_DATA_DIR)
def test_no_recurse(self):
d = origins.connect('directory', path=TEST_DATA_DIR, recurse=False)
# Dirty way of ensuring the walk did not recurse
self.assertFalse([f for f in d.files if '/' in f['name']])
def setUp(self):
path = os.path.join(TEST_DATA_DIR, FILENAME)
self.project = origins.connect('redcap-csv', path=path)
def setUp(self):
self.db = origins.connect('mysql', database='chinook', host=HOST,
user=USER, password=PASSWORD)
def setUp(self):
self.load_backend()
self.db = origins.connect('oracle', database='xe', user='******',
password='******')
def setUp(self):
self.path = os.path.join(TEST_DATA_DIR, 'chinook_tracks.csv')
self.f = origins.connect('delimited', path=self.path)
def test_db_schema(self):
db = origins.connect('oracle', database='xe', user='******',
password='******', schema='chinook')
self.assertTrue(db.tables)
def setUp(self):
self.load_backend()
self.db = origins.connect('postgresql', database='chinook', host=HOST,
user=USER, password=PASSWORD)
def setUp(self):
self.load_backend()
path = os.path.join(TEST_DATA_DIR, 'chinook.sqlite')
self.db = origins.connect('sqlite', path=path)
def setUp(self):
self.path = os.path.join(TEST_DATA_DIR, 'chinook_tracks_datadict.csv')
self.f = origins.connect('datadict', path=self.path)
def setUp(self):
self.db = origins.connect("mongodb", database="chinook")
def setUp(self):
self.path = os.path.join(TEST_DATA_DIR, 'sample.vcf')
self.f = origins.connect('vcf', path=self.path)
def setUp(self):
self.project = origins.connect('redcap-api', name='redcap_demo',
url=API_URL, token=API_TOKEN)