class PathwaySelector:
"""
model for the gui
"""
def __init__(self, fam_hier, bl):
self.fam_hier= fam_hier
self.analyzer= PathwayAnalyzer(fam_hier, bl)
def getFunctions(self, level):
"""
we suspend the sqlite approach here and utilize the index methodology of pandas.
"""
return self.analyzer.fam_hier["Level %s" %level].unique()
def setFunctions(self, level, function_list, parent_name=""):
self.fam_hier= self.analyzer.selectPathways(self.fam_hier, function_list, level, parent_name)
def select(self, method, level, function_list, parent_name="", key_enzyme_type=""):
"""
0: manual
1: key-enzyme based
"""
if method is 0:
self.setFunctions(level, function_list, parent_name)
elif method is 1:
def __init__(self, fam_hier, bl):
self.fam_hier= fam_hier
self.analyzer= PathwayAnalyzer(fam_hier, bl)
