def setUp(self):
self.fold = RNAalifold()
self.sequences = [
"ggggggggggggaaaaaaaacccccccccccc",
"ggggggggggggaaaaaaaacccccccccccc"
]
io = StringIO()
self.fold.input_file(io, self.sequences)
self.contents = io.getvalue().split("\n")
io.close()
def setUp(self):
self.fold = RNAalifold()
self.sequences = [
"ggggggggggggaaaaaaaacccccccccccc",
"ggggggggggggaaaaaaaacccccccccccc"
]
self.results = self.fold(self.sequences)
class RNAalifoldGenerateFileTest(unittest.TestCase):
def setUp(self):
self.fold = RNAalifold()
self.sequences = ["ggggggggggggaaaaaaaacccccccccccc",
"ggggggggggggaaaaaaaacccccccccccc"]
io = StringIO()
self.fold.input_file(io, self.sequences)
self.contents = io.getvalue().split("\n")
io.close()
def test_header(self):
val = self.contents[0]
self.assertEqual(val, '# STOCKHOLM 1.0')
def test_file_len(self):
val = len(self.contents)
self.assertEqual(val, 4)
def setUp(self):
self.fold = RNAalifold()
self.sequences = ["ggggggggggggaaaaaaaacccccccccccc",
"ggggggggggggaaaaaaaacccccccccccc"]
io = StringIO()
self.fold.input_file(io, self.sequences)
self.contents = io.getvalue().split("\n")
io.close()
class RNAalifoldGenerateFileTest(unittest.TestCase):
def setUp(self):
self.fold = RNAalifold()
self.sequences = [
"ggggggggggggaaaaaaaacccccccccccc",
"ggggggggggggaaaaaaaacccccccccccc"
]
io = StringIO()
self.fold.input_file(io, self.sequences)
self.contents = io.getvalue().split("\n")
io.close()
def test_header(self):
val = self.contents[0]
self.assertEqual(val, '# STOCKHOLM 1.0')
def test_file_len(self):
val = len(self.contents)
self.assertEqual(val, 4)
