def test_retrieve_uniprot_matches_reference(): xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN') xml_root = etree.fromstring(xml_text, xml_parser) ref_xml_filepath = get_installed_resource_filepath(os.path.join('resources', 'uniprot-search-abl1.xml.gz')) with gzip.open(ref_xml_filepath) as ref_xml_file: ref_xml_root = etree.parse(ref_xml_file, xml_parser) entry_name = xml_root.find('entry/name').text ref_entry_name = ref_xml_root.find('entry/name').text assert entry_name == ref_entry_name
def test_retrieve_uniprot_matches_reference(): xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN') xml_root = etree.fromstring(xml_text, xml_parser) ref_xml_filepath = get_installed_resource_filepath( os.path.join('resources', 'uniprot-search-abl1.xml.gz')) with gzip.open(ref_xml_filepath) as ref_xml_file: ref_xml_root = etree.parse(ref_xml_file, xml_parser) entry_name = xml_root.find('entry/name').text ref_entry_name = ref_xml_root.find('entry/name').text assert entry_name == ref_entry_name
def test_retrieve_uniprot(): xml_text = retrieve_uniprot('mnemonic:ABL1_HUMAN') xml_root = etree.fromstring(xml_text, xml_parser)