def setUpTestData(cls):
csv_filepath = join(settings.MEDIA_ROOT, "Standard_Library_MCF_Inhouse_metabolites.csv")
add_batch_standard({}, csv_filepath)
Adduct.objects.create(nM=1, delta_formula='-H', charge=-1)
cls.mzml_filepath = join(settings.MEDIA_ROOT, "sample.mzML")
cls.d1 = Dataset(name='foo')
cls.d1.save()
cls.lc1 = LcInfo.objects.create(content='LC1')
def test_batch_double_add(self):
# should not produce duplicate identical entries
add_batch_standard({}, open(self.csv_filepath, 'r'))
mol_list_1 = Molecule.objects.all().count()
std_list_1 = Standard.objects.all().count()
add_batch_standard({}, open(self.csv_filepath, 'r'))
self.assertEqual(Molecule.objects.all().count(), mol_list_1)
self.assertEqual(Standard.objects.all().count(), std_list_1)
def test_batch_add(self):
metadata = {}
errors = add_batch_standard(metadata, open(self.csv_filepath, 'r'))
self.assertEqual(len(errors), 0)
self.assertEqual(Standard.objects.all().count(), 861)
def test_all(self):
add_batch_standard({}, open(self.csv_filepath, 'r'))
standard_table = self.client.get('/inventory/').context['standard_list']
self.assertEqual(len(standard_table.rows), Standard.objects.count())
