def precision_recall(num_gbboxes, num_detections, tp, fp, scores,
dtype=tf.float64, scope=None):
"""Compute precision and recall from scores, true positives and false
positives booleans arrays
"""
# Input dictionaries: dict outputs as streaming metrics.
if isinstance(scores, dict):
d_precision = {}
d_recall = {}
for c in num_gbboxes.keys():
scope = 'precision_recall_%s' % c
p, r = precision_recall(num_gbboxes[c], num_detections[c],
tp[c], fp[c], scores[c],
dtype, scope)
d_precision[c] = p
d_recall[c] = r
return d_precision, d_recall
# Sort by score.
with tf.name_scope(scope, 'precision_recall',
[num_gbboxes, num_detections, tp, fp, scores]):
# Sort detections by score.
scores, idxes = tf.nn.top_k(scores, k=num_detections, sorted=True)
tp = tf.gather(tp, idxes)
fp = tf.gather(fp, idxes)
# Computer recall and precision.
tp = tf.cumsum(tf.cast(tp, dtype), axis=0)
fp = tf.cumsum(tf.cast(fp, dtype), axis=0)
recall = _safe_div(tp, tf.cast(num_gbboxes, dtype), 'recall')
precision = _safe_div(tp, tp + fp, 'precision')
return tf.tuple([precision, recall])
def logits_to_epsilon_bounds(logits, images):
probs = tf.reshape(tf.nn.softmax(tf.reshape(logits, [-1, 256])), tf.shape(logits))
cdf_lower = tf.cumsum(probs, axis=4, exclusive=True)
cdf_upper = tf.cumsum(probs, axis=4, exclusive=False)
# Awful hack to select the correct values
images_mask = tf.one_hot(images, 256)
cdf_lower = tf.reduce_sum(cdf_lower * images_mask, reduction_indices=[4])
cdf_upper = tf.reduce_sum(cdf_upper * images_mask, reduction_indices=[4])
return cdf_lower, cdf_upper
def lovasz_grad(gt_sorted):
"""
Computes gradient of the Lovasz extension w.r.t sorted errors
See Alg. 1 in paper
"""
gts = tf.reduce_sum(gt_sorted)
intersection = gts - tf.cumsum(gt_sorted)
union = gts + tf.cumsum(1. - gt_sorted)
jaccard = 1. - intersection / union
jaccard = tf.concat((jaccard[0:1], jaccard[1:] - jaccard[:-1]), 0)
return jaccard
def specgrams_to_melspecgrams(self, specgrams):
"""Converts specgrams to melspecgrams.
Args:
specgrams: Tensor of log magnitudes and instantaneous frequencies,
shape [batch, time, freq, 2].
Returns:
melspecgrams: Tensor of log magnitudes and instantaneous frequencies,
shape [batch, time, freq, 2], mel scaling of frequencies.
"""
if self._mel_downscale is None:
return specgrams
logmag = specgrams[:, :, :, 0]
p = specgrams[:, :, :, 1]
mag2 = tf.exp(2.0 * logmag)
phase_angle = tf.cumsum(p * np.pi, axis=-2)
l2mel = tf.to_float(self._linear_to_mel_matrix())
logmelmag2 = self._safe_log(tf.tensordot(mag2, l2mel, 1))
mel_phase_angle = tf.tensordot(phase_angle, l2mel, 1)
mel_p = spectral_ops.instantaneous_frequency(mel_phase_angle)
return tf.concat(
[logmelmag2[:, :, :, tf.newaxis], mel_p[:, :, :, tf.newaxis]], axis=-1)
def _compareGradient(self, shape, axis, exclusive, reverse):
x = np.arange(0, 50).reshape(shape).astype(np.float64)
with self.test_session():
t = tf.convert_to_tensor(x)
result = tf.cumsum(t, axis, exclusive, reverse)
jacob_t, jacob_n = tf.test.compute_gradient(t, shape, result, shape, x_init_value=x, delta=1)
self.assertAllClose(jacob_t, jacob_n, rtol=1e-8, atol=1e-8)
def boolean_mask(boxlist, indicator, fields=None, scope=None,
use_static_shapes=False, indicator_sum=None):
"""Select boxes from BoxList according to indicator and return new BoxList.
`boolean_mask` returns the subset of boxes that are marked as "True" by the
indicator tensor. By default, `boolean_mask` returns boxes corresponding to
the input index list, as well as all additional fields stored in the boxlist
(indexing into the first dimension). However one can optionally only draw
from a subset of fields.
Args:
boxlist: BoxList holding N boxes
indicator: a rank-1 boolean tensor
fields: (optional) list of fields to also gather from. If None (default),
all fields are gathered from. Pass an empty fields list to only gather
the box coordinates.
scope: name scope.
use_static_shapes: Whether to use an implementation with static shape
gurantees.
indicator_sum: An integer containing the sum of `indicator` vector. Only
required if `use_static_shape` is True.
Returns:
subboxlist: a BoxList corresponding to the subset of the input BoxList
specified by indicator
Raises:
ValueError: if `indicator` is not a rank-1 boolean tensor.
"""
with tf.name_scope(scope, 'BooleanMask'):
if indicator.shape.ndims != 1:
raise ValueError('indicator should have rank 1')
if indicator.dtype != tf.bool:
raise ValueError('indicator should be a boolean tensor')
if use_static_shapes:
if not (indicator_sum and isinstance(indicator_sum, int)):
raise ValueError('`indicator_sum` must be a of type int')
selected_positions = tf.to_float(indicator)
indexed_positions = tf.cast(
tf.multiply(
tf.cumsum(selected_positions), selected_positions),
dtype=tf.int32)
one_hot_selector = tf.one_hot(
indexed_positions - 1, indicator_sum, dtype=tf.float32)
sampled_indices = tf.cast(
tf.tensordot(
tf.to_float(tf.range(tf.shape(indicator)[0])),
one_hot_selector,
axes=[0, 0]),
dtype=tf.int32)
return gather(boxlist, sampled_indices, use_static_shapes=True)
else:
subboxlist = box_list.BoxList(tf.boolean_mask(boxlist.get(), indicator))
if fields is None:
fields = boxlist.get_extra_fields()
for field in fields:
if not boxlist.has_field(field):
raise ValueError('boxlist must contain all specified fields')
subfieldlist = tf.boolean_mask(boxlist.get_field(field), indicator)
subboxlist.add_field(field, subfieldlist)
return subboxlist
def weights_concatenated(labels):
"""Assign weight 1.0 to the "target" part of the concatenated labels.
The labels look like:
source English I love you . ID1 target French Je t'aime . ID1 source
English the cat ID1 target French le chat ID1 source English ...
We want to assign weight 1.0 to all words in the target text (including the
ID1 end symbol), but not to the source text or the boilerplate. In the
above example, the target words that get positive weight are:
Je t'aime . ID1 le chat ID1
Args:
labels: a Tensor
Returns:
a Tensor
"""
eos_mask = tf.to_int32(tf.equal(labels, 1))
sentence_num = tf.cumsum(eos_mask, axis=1, exclusive=True)
in_target = tf.equal(tf.mod(sentence_num, 2), 1)
# first two tokens of each sentence are boilerplate.
sentence_num_plus_one = sentence_num + 1
shifted = tf.pad(sentence_num_plus_one, [[0, 0], [2, 0], [0, 0],
[0, 0]])[:, :-2, :, :]
nonboilerplate = tf.equal(sentence_num_plus_one, shifted)
ret = tf.to_float(tf.logical_and(nonboilerplate, in_target))
return ret
def unwrap(p, discont=np.pi, axis=-1):
"""Unwrap a cyclical phase tensor.
Args:
p: Phase tensor.
discont: Float, size of the cyclic discontinuity.
axis: Axis of which to unwrap.
Returns:
unwrapped: Unwrapped tensor of same size as input.
"""
dd = diff(p, axis=axis)
ddmod = tf.mod(dd + np.pi, 2.0 * np.pi) - np.pi
idx = tf.logical_and(tf.equal(ddmod, -np.pi), tf.greater(dd, 0))
ddmod = tf.where(idx, tf.ones_like(ddmod) * np.pi, ddmod)
ph_correct = ddmod - dd
idx = tf.less(tf.abs(dd), discont)
ddmod = tf.where(idx, tf.zeros_like(ddmod), dd)
ph_cumsum = tf.cumsum(ph_correct, axis=axis)
shape = p.get_shape().as_list()
shape[axis] = 1
ph_cumsum = tf.concat([tf.zeros(shape, dtype=p.dtype), ph_cumsum], axis=axis)
unwrapped = p + ph_cumsum
return unwrapped
def _get_values_from_start_and_end(self, input_tensor, num_start_samples,
num_end_samples, total_num_samples):
"""slices num_start_samples and last num_end_samples from input_tensor.
Args:
input_tensor: An int32 tensor of shape [N] to be sliced.
num_start_samples: Number of examples to be sliced from the beginning
of the input tensor.
num_end_samples: Number of examples to be sliced from the end of the
input tensor.
total_num_samples: Sum of is num_start_samples and num_end_samples. This
should be a scalar.
Returns:
A tensor containing the first num_start_samples and last num_end_samples
from input_tensor.
"""
input_length = tf.shape(input_tensor)[0]
start_positions = tf.less(tf.range(input_length), num_start_samples)
end_positions = tf.greater_equal(
tf.range(input_length), input_length - num_end_samples)
selected_positions = tf.logical_or(start_positions, end_positions)
selected_positions = tf.cast(selected_positions, tf.int32)
indexed_positions = tf.multiply(tf.cumsum(selected_positions),
selected_positions)
one_hot_selector = tf.one_hot(indexed_positions - 1,
total_num_samples,
dtype=tf.int32)
return tf.tensordot(input_tensor, one_hot_selector, axes=[0, 0])
def __init__(self,
state_size,
num_timesteps,
mixing_coeff=0.5,
prior_mode_mean=1,
sigma_min=1e-5,
variance=1.0,
dtype=tf.float32,
random_seed=None,
trainable=True,
init_bs_to_zero=False,
graph_collection_name="P_VARS"):
self.state_size = state_size
self.num_timesteps = num_timesteps
self.sigma_min = sigma_min
self.dtype = dtype
self.variance = variance
self.mixing_coeff = mixing_coeff
self.prior_mode_mean = prior_mode_mean
if init_bs_to_zero:
initializers = [tf.zeros_initializer for _ in xrange(num_timesteps)]
else:
initializers = [tf.random_uniform_initializer(seed=random_seed) for _ in xrange(num_timesteps)]
self.bs = [
tf.get_variable(
shape=[state_size],
dtype=self.dtype,
name="b_%d" % (t + 1),
initializer=initializers[t],
collections=[tf.GraphKeys.GLOBAL_VARIABLES, graph_collection_name],
trainable=trainable) for t in xrange(num_timesteps)
]
self.Bs = tf.cumsum(self.bs, reverse=True, axis=0)
def melspecgrams_to_specgrams(self, melspecgrams):
"""Converts melspecgrams to specgrams.
Args:
melspecgrams: Tensor of log magnitudes and instantaneous frequencies,
shape [batch, time, freq, 2], mel scaling of frequencies.
Returns:
specgrams: Tensor of log magnitudes and instantaneous frequencies,
shape [batch, time, freq, 2].
"""
if self._mel_downscale is None:
return melspecgrams
logmelmag2 = melspecgrams[:, :, :, 0]
mel_p = melspecgrams[:, :, :, 1]
mel2l = tf.to_float(self._mel_to_linear_matrix())
mag2 = tf.tensordot(tf.exp(logmelmag2), mel2l, 1)
logmag = 0.5 * self._safe_log(mag2)
mel_phase_angle = tf.cumsum(mel_p * np.pi, axis=-2)
phase_angle = tf.tensordot(mel_phase_angle, mel2l, 1)
p = spectral_ops.instantaneous_frequency(phase_angle)
return tf.concat(
[logmag[:, :, :, tf.newaxis], p[:, :, :, tf.newaxis]], axis=-1)
def _precision_recall(n_gbboxes, n_detections, scores, tp, fp, scope=None):
"""Compute precision and recall from scores, true positives and false
positives booleans arrays
"""
# Sort by score.
with tf.name_scope(scope, 'prec_rec', [n_gbboxes, scores, tp, fp]):
# Sort detections by score.
scores, idxes = tf.nn.top_k(scores, k=n_detections, sorted=True)
tp = tf.gather(tp, idxes)
fp = tf.gather(fp, idxes)
# Computer recall and precision.
dtype = tf.float64
tp = tf.cumsum(tf.cast(tp, dtype), axis=0)
fp = tf.cumsum(tf.cast(fp, dtype), axis=0)
recall = _safe_div(tp, tf.cast(n_gbboxes, dtype), 'recall')
precision = _safe_div(tp, tp + fp, 'precision')
return tf.tuple([precision, recall])
def reconstruction_loss(self, x_input, x_target, x_length, z=None):
"""Reconstruction loss calculation.
Args:
x_input: Batch of decoder input sequences for teacher forcing, sized
`[batch_size, max(x_length), output_depth]`.
x_target: Batch of expected output sequences to compute loss against,
sized `[batch_size, max(x_length), output_depth]`.
x_length: Length of input/output sequences, sized `[batch_size]`.
z: (Optional) Latent vectors. Required if model is conditional. Sized
`[n, z_size]`.
Returns:
r_loss: The reconstruction loss for each sequence in the batch.
metric_map: Map from metric name to tf.metrics return values for logging.
truths: Ground truth labels.
predictions: Predicted labels.
"""
batch_size = x_input.shape[0].value
has_z = z is not None
z = tf.zeros([batch_size, 0]) if z is None else z
repeated_z = tf.tile(
tf.expand_dims(z, axis=1), [1, tf.shape(x_input)[1], 1])
sampling_probability_static = tensor_util.constant_value(
self._sampling_probability)
if sampling_probability_static == 0.0:
# Use teacher forcing.
x_input = tf.concat([x_input, repeated_z], axis=2)
helper = seq2seq.TrainingHelper(x_input, x_length)
else:
# Use scheduled sampling.
helper = seq2seq.ScheduledOutputTrainingHelper(
inputs=x_input,
sequence_length=x_length,
auxiliary_inputs=repeated_z if has_z else None,
sampling_probability=self._sampling_probability,
next_inputs_fn=self._sample)
decoder_outputs = self._decode(z, helper=helper, x_input=x_input)
flat_x_target = flatten_maybe_padded_sequences(x_target, x_length)
flat_rnn_output = flatten_maybe_padded_sequences(
decoder_outputs.rnn_output, x_length)
r_loss, metric_map, truths, predictions = self._flat_reconstruction_loss(
flat_x_target, flat_rnn_output)
# Sum loss over sequences.
cum_x_len = tf.concat([(0,), tf.cumsum(x_length)], axis=0)
r_losses = []
for i in range(batch_size):
b, e = cum_x_len[i], cum_x_len[i + 1]
r_losses.append(tf.reduce_sum(r_loss[b:e]))
r_loss = tf.stack(r_losses)
return r_loss, metric_map, truths, predictions
def remap_keys(sparse_tensor):
# Current indices of our SparseTensor that we need to fix
bad_indices = sparse_tensor.indices
# Current values of our SparseTensor that we need to fix
bad_values = sparse_tensor.values
# Group by the batch_indices and get the count for each
size = tf.segment_sum(data = tf.ones_like(bad_indices[:,0], dtype = tf.int64), segment_ids = bad_indices[:,0]) - 1
# The number of batch_indices (this should be batch_size unless it is a partially full batch)
length = tf.shape(size, out_type = tf.int64)[0]
# Finds the cumulative sum which we can use for indexing later
cum = tf.cumsum(size)
# The offsets between each example in the batch due to our concatentation of the keys in the decode_example method
length_range = tf.range(start = 0, limit = length, delta = 1, dtype = tf.int64)
# Indices of the SparseTensor's indices member of the rows we added by the concatentation of our keys in the decode_example method
cum_range = cum + length_range
# The keys that we have extracted back out of our concatentated SparseTensor
gathered_indices = tf.squeeze(tf.gather(bad_indices, cum_range)[:,1])
# The enumerated row indices of the SparseTensor's indices member
sparse_indices_range = tf.range(tf.shape(bad_indices, out_type = tf.int64)[0], dtype = tf.int64)
# We want to find here the row indices of the SparseTensor's indices member that are of our actual data and not the concatentated rows
# So we want to find the intersection of the two sets and then take the opposite of that
x = sparse_indices_range
s = cum_range
# Number of multiples we are going to tile x, which is our sparse_indices_range
tile_multiples = tf.concat([tf.ones(tf.shape(tf.shape(x)), dtype=tf.int64), tf.shape(s, out_type = tf.int64)], axis = 0)
# Expands x, our sparse_indices_range, into a rank 2 tensor and then multiplies the rows by 1 (no copying) and the columns by the number of examples in the batch
x_tile = tf.tile(tf.expand_dims(x, -1), tile_multiples)
# Essentially a vectorized logical or, that we then negate
x_not_in_s = ~tf.reduce_any(tf.equal(x_tile, s), -1)
# The SparseTensor's indices that are our actual data by using the boolean_mask we just made above applied to the entire indices member of our SparseTensor
selected_indices = tf.boolean_mask(tensor = bad_indices, mask = x_not_in_s, axis = 0)
# Apply the same boolean_mask to the entire values member of our SparseTensor to get the actual values data
selected_values = tf.boolean_mask(tensor = bad_values, mask = x_not_in_s, axis = 0)
# Need to replace the first column of our selected_indices with keys, so we first need to tile our gathered_indices
tiling = tf.tile(input = tf.expand_dims(gathered_indices[0], -1), multiples = tf.expand_dims(size[0] , -1))
# We have to repeatedly apply the tiling to each example in the batch
# Since it is jagged we cannot use tf.map_fn due to the stacking of the TensorArray, so we have to create our own custom version
def loop_body(i, tensor_grow):
return i + 1, tf.concat(values = [tensor_grow, tf.tile(input = tf.expand_dims(gathered_indices[i], -1), multiples = tf.expand_dims(size[i] , -1))], axis = 0)
_, result = tf.while_loop(lambda i, tensor_grow: i < length, loop_body, [tf.constant(1, dtype = tf.int64), tiling])
# Concatenate tiled keys with the 2nd column of selected_indices
selected_indices_fixed = tf.concat([tf.expand_dims(result, -1), tf.expand_dims(selected_indices[:, 1], -1)], axis = 1)
# Combine everything together back into a SparseTensor
remapped_sparse_tensor = tf.SparseTensor(indices = selected_indices_fixed, values = selected_values, dense_shape = sparse_tensor.dense_shape)
return remapped_sparse_tensor
def crappy_plot(val, levels):
x_len = val.get_shape().as_list()[1]
left_val = tf.concat(1, (val[:, 0:1], val[:, 0:x_len - 1]))
right_val = tf.concat(1, (val[:, 1:], val[:, x_len - 1:]))
left_mean = (val + left_val) // 2
right_mean = (val + right_val) // 2
low_val = tf.minimum(tf.minimum(left_mean, right_mean), val)
high_val = tf.maximum(tf.maximum(left_mean, right_mean), val + 1)
return tf.cumsum(tf.one_hot(low_val, levels, axis=1) - tf.one_hot(high_val, levels, axis=1), axis=1)
def __init__(self, requests, expert_capacity):
"""Create a TruncatingDispatcher.
Args:
requests: a boolean `Tensor` of shape `[batch, length, num_experts]`.
Alternatively, a float or int Tensor containing zeros and ones.
expert_capacity: a Scalar - maximum number of examples per expert per
batch element.
Returns:
a TruncatingDispatcher
"""
self._requests = tf.to_float(requests)
self._expert_capacity = expert_capacity
expert_capacity_f = tf.to_float(expert_capacity)
self._batch, self._length, self._num_experts = tf.unstack(
tf.shape(self._requests), num=3)
# [batch, length, num_experts]
position_in_expert = tf.cumsum(self._requests, axis=1, exclusive=True)
# [batch, length, num_experts]
self._gates = self._requests * tf.to_float(
tf.less(position_in_expert, expert_capacity_f))
batch_index = tf.reshape(
tf.to_float(tf.range(self._batch)), [self._batch, 1, 1])
length_index = tf.reshape(
tf.to_float(tf.range(self._length)), [1, self._length, 1])
expert_index = tf.reshape(
tf.to_float(tf.range(self._num_experts)), [1, 1, self._num_experts])
# position in a Tensor with shape [batch * num_experts * expert_capacity]
flat_position = (
position_in_expert +
batch_index * (tf.to_float(self._num_experts) * expert_capacity_f) +
expert_index * expert_capacity_f)
# Tensor of shape [batch * num_experts * expert_capacity].
# each element is an integer in [0, length)
self._indices = tf.unsorted_segment_sum(
data=tf.reshape((length_index + 1.0) * self._gates, [-1]),
segment_ids=tf.to_int32(tf.reshape(flat_position, [-1])),
num_segments=self._batch * self._num_experts * expert_capacity)
self._indices = tf.reshape(
self._indices,
[self._batch, self._num_experts, expert_capacity])
# Tensors of shape [batch, num_experts, expert_capacity].
# each element is 0.0 or 1.0
self._nonpadding = tf.minimum(self._indices, 1.0)
# each element is an integer in [0, length)
self._indices = tf.nn.relu(self._indices - 1.0)
# self._flat_indices is [batch, num_experts, expert_capacity], with values
# in [0, batch * length)
self._flat_indices = tf.to_int32(
self._indices +
(tf.reshape(tf.to_float(tf.range(self._batch)), [-1, 1, 1])
* tf.to_float(self._length)))
self._indices = tf.to_int32(self._indices)
def systematic_resampling(log_weights, states, n, b):
"""Resample states with systematic resampling.
Args:
log_weights: A (n x b) Tensor representing a batch of b logits for n-ary
Categorical distribution.
states: A list of (b*n x d) Tensors that will be resample in from the groups
of every n-th row.
Returns:
resampled_states: A list of (b*n x d) Tensors resampled via stratified sampling.
log_probs: A (n x b) Tensor of the log probabilities of the ancestry decisions.
resampling_parameters: The Tensor of parameters of the resampling distribution.
ancestors: An (n x b) Tensor of integral indices representing the ancestry decisions.
resampling_dist: The distribution object for resampling.
"""
log_weights = tf.convert_to_tensor(log_weights)
states = [tf.convert_to_tensor(state) for state in states]
log_weights = tf.transpose(log_weights, perm=[1,0])
probs = tf.nn.softmax(
tf.tile(tf.expand_dims(log_weights, axis=1),
[1, n, 1])
)
cdfs = tf.concat([tf.zeros((b,n,1), dtype=probs.dtype), tf.cumsum(probs, axis=2)], 2)
bins = tf.range(n, dtype=probs.dtype) / n
bins = tf.tile(tf.reshape(bins, [1,-1,1]), [b,1,n+1])
strat_cdfs = tf.minimum(tf.maximum((cdfs - bins) * n, 0.0), 1.0)
resampling_parameters = strat_cdfs[:,:,1:] - strat_cdfs[:,:,:-1]
resampling_dist = tf.contrib.distributions.Categorical(
probs=resampling_parameters,
allow_nan_stats=True)
U = tf.random_uniform((b, 1, 1), dtype=probs.dtype)
ancestors = tf.stop_gradient(tf.reduce_sum(tf.to_float(U > strat_cdfs[:,:,1:]), axis=-1))
log_probs = resampling_dist.log_prob(ancestors)
ancestors = tf.transpose(ancestors, perm=[1,0])
log_probs = tf.transpose(log_probs, perm=[1,0])
offset = tf.expand_dims(tf.range(b, dtype=probs.dtype), 0)
ancestor_inds = tf.reshape(ancestors * b + offset, [-1])
resampled_states = []
for state in states:
resampled_states.append(tf.gather(state, ancestor_inds))
return resampled_states, log_probs, resampling_parameters, ancestors, resampling_dist
def compute(x):
batch = x[0]
start = x[1]
end = x[2]
padded_onehot = tf.concat([onehot[batch][start:end],
tf.zeros([tf.maximum(window - (end - start), 0), num_classes])],
axis=0)
classes = tf.cumsum(padded_onehot)
normalization = tf.cast(tf.expand_dims(tf.range(1, window + 1), -1), classes.dtype)
return classes / normalization
def _effective_sample_size_single_state(states, filter_beyond_lag,
filter_threshold):
"""ESS computation for one single Tensor argument."""
with tf.name_scope(
'effective_sample_size_single_state',
values=[states, filter_beyond_lag, filter_threshold]):
states = tf.convert_to_tensor(states, name='states')
dt = states.dtype
# filter_beyond_lag == None ==> auto_corr is the full sequence.
auto_corr = stats.auto_correlation(
states, axis=0, max_lags=filter_beyond_lag)
if filter_threshold is not None:
filter_threshold = tf.convert_to_tensor(
filter_threshold, dtype=dt, name='filter_threshold')
# Get a binary mask to zero out values of auto_corr below the threshold.
# mask[i, ...] = 1 if auto_corr[j, ...] > threshold for all j <= i,
# mask[i, ...] = 0, otherwise.
# So, along dimension zero, the mask will look like [1, 1, ..., 0, 0,...]
# Building step by step,
# Assume auto_corr = [1, 0.5, 0.0, 0.3], and filter_threshold = 0.2.
# Step 1: mask = [False, False, True, False]
mask = auto_corr < filter_threshold
# Step 2: mask = [0, 0, 1, 1]
mask = tf.cast(mask, dtype=dt)
# Step 3: mask = [0, 0, 1, 2]
mask = tf.cumsum(mask, axis=0)
# Step 4: mask = [1, 1, 0, 0]
mask = tf.maximum(1. - mask, 0.)
auto_corr *= mask
# With R[k] := auto_corr[k, ...],
# ESS = N / {1 + 2 * Sum_{k=1}^N (N - k) / N * R[k]}
# = N / {-1 + 2 * Sum_{k=0}^N (N - k) / N * R[k]} (since R[0] = 1)
# approx N / {-1 + 2 * Sum_{k=0}^M (N - k) / N * R[k]}
# where M is the filter_beyond_lag truncation point chosen above.
# Get the factor (N - k) / N, and give it shape [M, 1,...,1], having total
# ndims the same as auto_corr
n = _axis_size(states, axis=0)
k = tf.range(0., _axis_size(auto_corr, axis=0))
nk_factor = (n - k) / n
if auto_corr.shape.ndims is not None:
new_shape = [-1] + [1] * (auto_corr.shape.ndims - 1)
else:
new_shape = tf.concat(
([-1],
tf.ones([tf.rank(auto_corr) - 1], dtype=tf.int32)),
axis=0)
nk_factor = tf.reshape(nk_factor, new_shape)
return n / (-1 + 2 * tf.reduce_sum(nk_factor * auto_corr, axis=0))
def _compare(self, x, axis, reverse, use_gpu=False):
np_out = x
if reverse:
np_out = numpy_reverse(np_out, axis)
np_out = np.cumsum(np_out, axis=axis)
if reverse:
np_out = numpy_reverse(np_out, axis)
with self.test_session(use_gpu=use_gpu):
tf_out = tf.cumsum(x, axis, reverse).eval()
self.assertAllClose(np_out, tf_out)
def shift_values(values, discount, rollout, final_values=0.0):
"""Shift values up by some amount of time.
Those values that shift from a value beyond the last value
are calculated using final_values.
"""
roll_range = tf.cumsum(tf.ones_like(values[:rollout, :]), 0,
exclusive=True, reverse=True)
final_pad = tf.expand_dims(final_values, 0) * discount ** roll_range
return tf.concat([discount ** rollout * values[rollout:, :],
final_pad], 0)
def infer_length(seq, eos_ix, time_major=False, dtype=tf.int32):
"""
compute length given output indices and eos code
:param seq: tf matrix [time,batch] if time_major else [batch,time]
:param eos_ix: integer index of end-of-sentence token
:returns: lengths, int32 vector of shape [batch]
"""
axis = 0 if time_major else 1
is_eos = tf.cast(tf.equal(seq, eos_ix), dtype)
count_eos = tf.cumsum(is_eos,axis=axis,exclusive=True)
lengths = tf.reduce_sum(tf.cast(tf.equal(count_eos,0),dtype),axis=axis)
return lengths
def _subsample_selection_to_desired_neg_pos_ratio(self,
indices,
match,
max_negatives_per_positive,
min_negatives_per_image=0):
"""Subsample a collection of selected indices to a desired neg:pos ratio.
This function takes a subset of M indices (indexing into a large anchor
collection of N anchors where M<N) which are labeled as positive/negative
via a Match object (matched indices are positive, unmatched indices
are negative). It returns a subset of the provided indices retaining all
positives as well as up to the first K negatives, where:
K=floor(num_negative_per_positive * num_positives).
For example, if indices=[2, 4, 5, 7, 9, 10] (indexing into 12 anchors),
with positives=[2, 5] and negatives=[4, 7, 9, 10] and
num_negatives_per_positive=1, then the returned subset of indices
is [2, 4, 5, 7].
Args:
indices: An integer tensor of shape [M] representing a collection
of selected anchor indices
match: A matcher.Match object encoding the match between anchors and
groundtruth boxes for a given image, with rows of the Match objects
corresponding to groundtruth boxes and columns corresponding to anchors.
max_negatives_per_positive: (float) maximum number of negatives for
each positive anchor.
min_negatives_per_image: minimum number of negative anchors for a given
image. Allow sampling negatives in image without any positive anchors.
Returns:
selected_indices: An integer tensor of shape [M'] representing a
collection of selected anchor indices with M' <= M.
num_positives: An integer tensor representing the number of positive
examples in selected set of indices.
num_negatives: An integer tensor representing the number of negative
examples in selected set of indices.
"""
positives_indicator = tf.gather(match.matched_column_indicator(), indices)
negatives_indicator = tf.gather(match.unmatched_column_indicator(), indices)
num_positives = tf.reduce_sum(tf.to_int32(positives_indicator))
max_negatives = tf.maximum(min_negatives_per_image,
tf.to_int32(max_negatives_per_positive *
tf.to_float(num_positives)))
topk_negatives_indicator = tf.less_equal(
tf.cumsum(tf.to_int32(negatives_indicator)), max_negatives)
subsampled_selection_indices = tf.where(
tf.logical_or(positives_indicator, topk_negatives_indicator))
num_negatives = tf.size(subsampled_selection_indices) - num_positives
return (tf.reshape(tf.gather(indices, subsampled_selection_indices), [-1]),
num_positives, num_negatives)
def get_train_choice(state_ph,var_dict,random_t,mask,dropout_keep_prob):
score = get_q(state_ph,var_dict,dropout_keep_prob)
mid = score
# mid = mid + random_t
mid = tf.maximum(mid, -2.5)
mid = tf.minimum(mid, 1.5)
mid = mid - tf.reduce_min(mid)
mid = mid + 0.00001 * mask
mid = mid / tf.reduce_max(mid)
mid = mid * (1-0.05)
mid = mid + 0.05
mid = mid * mask
weight = mid
weight_sum = tf.reduce_sum(weight,reduction_indices=[1])
high = tf.cumsum(weight, axis=1, exclusive=False)
low = tf.cumsum(weight, axis=1, exclusive=True)
sss0 = tf.reshape(weight_sum,[-1,1])
high0 = high / sss0
low0 = low / sss0
r = tf.random_uniform(tf.shape(sss0), dtype=tf.float32)
high1 = tf.less(r, high0)
low1 = tf.less_equal(low0, r)
good = tf.logical_and(high1,low1)
good0 = tf.to_float(good)
mid = tf.argmax(good0, dimension=1)
train_choice = mid
mid = score
mid = mid + random_t
mid = mid - tf.reduce_min(mid)
#mid = tf.exp(mid)
mid = mid * mask
mid = mid + mask
mid = tf.argmax(mid, dimension=1)
cal_choice = mid
return score, weight, train_choice, cal_choice
def test_readme_example(self):
data = tf.random.uniform((128, 128), 0, 10, dtype=tf.int32)
histogram = tf.bincount(data, minlength=10, maxlength=10)
cdf = tf.cumsum(histogram, exclusive=False)
cdf = tf.pad(cdf, [[1, 0]])
cdf = tf.reshape(cdf, [1, 1, -1])
data = tf.cast(data, tf.int16)
encoded = range_coding_ops.range_encode(data, cdf, precision=14)
decoded = range_coding_ops.range_decode(
encoded, tf.shape(data), cdf, precision=14)
with self.cached_session() as sess:
self.assertAllEqual(*sess.run((data, decoded)))
def _randomize(coeffs, radixes, seed=None):
"""Applies the Owen (2017) randomization to the coefficients."""
given_dtype = coeffs.dtype
coeffs = tf.to_int32(coeffs)
num_coeffs = tf.shape(coeffs)[-1]
radixes = tf.reshape(tf.to_int32(radixes), shape=[-1])
stream = distributions.SeedStream(seed, salt='MCMCSampleHaltonSequence2')
perms = _get_permutations(num_coeffs, radixes, seed=stream())
perms = tf.reshape(perms, shape=[-1])
radix_sum = tf.reduce_sum(radixes)
radix_offsets = tf.reshape(tf.cumsum(radixes, exclusive=True),
shape=[-1, 1])
offsets = radix_offsets + tf.range(num_coeffs) * radix_sum
permuted_coeffs = tf.gather(perms, coeffs + offsets)
return tf.cast(permuted_coeffs, dtype=given_dtype)
def call(self, inputs, mask=None):
if mask is None:
mask = K.zeros_like(inputs)
mask = K.sum(mask, axis=-1)
mask = 1 + mask
else:
mask = K.cast(mask, K.dtype(inputs))
safe_n1 = K.sum(mask, axis=1) - 1
safe_n1 = K.maximum(safe_n1, K.ones_like(safe_n1))
safe_n1 = K.expand_dims(safe_n1)
r = tf.cumsum(mask, axis=1) - 1
r = self.start + (self.stop - self.start) * r / safe_n1
r = mask * r
r = K.expand_dims(r)
return r
def __init__(self,
state_size,
num_timesteps,
sigma_min=1e-5,
dtype=tf.float32):
self.state_size = state_size
self.num_timesteps = num_timesteps
self.sigma_min = sigma_min
self.dtype = dtype
self.bs = [
tf.get_variable(
shape=[state_size],
dtype=self.dtype,
name="b_%d" % (t + 1),
initializer=tf.zeros_initializer) for t in xrange(num_timesteps)
]
self.Bs = tf.cumsum(self.bs, reverse=True, axis=0)
self.q_mus = [
snt.Linear(output_size=state_size) for _ in xrange(num_timesteps)
]
self.q_sigmas = [
tf.get_variable(
shape=[state_size],
dtype=self.dtype,
name="q_sigma_%d" % (t + 1),
initializer=tf.zeros_initializer) for t in xrange(num_timesteps)
]
self.r_mus = [
tf.get_variable(
shape=[state_size],
dtype=self.dtype,
name="r_mu_%d" % (t + 1),
initializer=tf.zeros_initializer) for t in xrange(num_timesteps)
]
self.r_sigmas = [
tf.get_variable(
shape=[state_size],
dtype=self.dtype,
name="r_sigma_%d" % (t + 1),
initializer=tf.zeros_initializer) for t in xrange(num_timesteps)
]
def bottleneck(self, x): # pylint: disable=arguments-differ
hparams = self.hparams
if hparams.unordered:
return super(AutoencoderOrderedDiscrete, self).bottleneck(x)
noise = hparams.bottleneck_noise
hparams.bottleneck_noise = 0.0 # We'll add noise below.
x, loss = discretization.parametrized_bottleneck(x, hparams)
hparams.bottleneck_noise = noise
if hparams.mode == tf.estimator.ModeKeys.TRAIN:
# We want a number p such that p^bottleneck_bits = 1 - noise.
# So log(p) * bottleneck_bits = log(noise)
log_p = tf.log(1 - float(noise) / 2) / float(hparams.bottleneck_bits)
# Probabilities of flipping are p, p^2, p^3, ..., p^bottleneck_bits.
noise_mask = 1.0 - tf.exp(tf.cumsum(tf.zeros_like(x) + log_p, axis=-1))
# Having the no-noise mask, we can make noise just uniformly at random.
ordered_noise = tf.random_uniform(tf.shape(x))
# We want our noise to be 1s at the start and random {-1, 1} bits later.
ordered_noise = tf.to_float(tf.less(noise_mask, ordered_noise))
# Now we flip the bits of x on the noisy positions (ordered and normal).
x *= 2.0 * ordered_noise - 1
return x, loss
def specgrams_to_stfts(self, specgrams):
"""Converts specgrams to stfts.
Args:
specgrams: Tensor of log magnitudes and instantaneous frequencies,
shape [batch, time, freq, 2].
Returns:
stfts: Complex64 tensor of stft, shape [batch, time, freq, 1].
"""
logmag = specgrams[:, :, :, 0]
p = specgrams[:, :, :, 1]
mag = tf.exp(logmag)
if self._ifreq:
phase_angle = tf.cumsum(p * np.pi, axis=-2)
else:
phase_angle = p * np.pi
return spectral_ops.polar2rect(mag, phase_angle)[:, :, :, tf.newaxis]
keep_dims=False, name=None) 对tensor中各个元素求逻辑’与’
# ‘x’ is
# [[True, True]
# [False, False]]
tf.reduce_all(x) ==> False
tf.reduce_all(x, 0) ==> [False, False]
tf.reduce_all(x, 1) ==> [True, False]
tf.reduce_any(input_tensor,
reduction_indices=None,
keep_dims=False, name=None) 对tensor中各个元素求逻辑’或’
tf.accumulate_n(inputs, shape=None,
tensor_dtype=None, name=None) 计算一系列tensor的和
# tensor ‘a’ is [[1, 2], [3, 4]]
# tensor b is [[5, 0], [0, 6]]
tf.accumulate_n([a, b, a]) ==> [[7, 4], [6, 14]]
tf.cumsum(x, axis=0, exclusive=False,
reverse=False, name=None) 求累积和
tf.cumsum([a, b, c]) ==> [a, a + b, a + b + c]
tf.cumsum([a, b, c], exclusive=True) ==> [0, a, a + b]
tf.cumsum([a, b, c], reverse=True) ==> [a + b + c, b + c, c]
tf.cumsum([a, b, c], exclusive=True, reverse=True) ==> [b + c, c, 0]
六、分割(Segmentation)
tf.segment_sum(data, segment_ids, name=None) 根据segment_ids的分段计算各个片段的和
其中segment_ids为一个size与data第一维相同的tensor
其中id为int型数据，最大id不大于size
c = tf.constant([[1,2,3,4], [-1,-2,-3,-4], [5,6,7,8]])
tf.segment_sum(c, tf.constant([0, 0, 1]))
==>[[0 0 0 0]
[5 6 7 8]]
上面例子分为[0,1]两id,对相同id的data相应数据进行求和,
并放入结果的相应id中，
def _compute_loss(self, logits):
"""Compute optimization loss."""
target_output = self.iterator.target_output
if self.time_major:
target_output = tf.transpose(target_output)
max_time = self.get_max_time(target_output)
### experiments
# batch_cd_list = tf.zeros([1, tf.cast(logits.get_shape()[2], tf.int32)])
# i = tf.constant(0)
# while_condition = lambda i, b: tf.less(i, self.batch_size)
# def body(i, batch_cd_list):
# one_hot = tf.one_hot(target_output[i], logits.get_shape()[2])
# dist = tf.reduce_sum(one_hot, axis=0)
# cd_list = tf.divide(dist, tf.reduce_sum(dist))
# j = tf.constant(1)
# def while_condition_2(j, dist, cd_list):
# return tf.less(j, max_time)
# def body_2(j, dist, cd_list):
# dist = tf.subtract(dist, tf.one_hot(tf.argmax(logits[i][j-1]),
# logits.get_shape()[2]))
# cd_list = tf.concat([cd_list, tf.divide(dist, tf.reduce_sum(dist))], axis=0)
# tf.Print(j, [j], message="This is j!!!!")
# return [tf.add(j, 1), dist, cd_list]
# s = tf.while_loop(while_condition_2, body_2, [j, dist, cd_list],
# shape_invariants=[j.get_shape(),
# dist.get_shape(), tf.TensorShape([None])])
# cd_list = tf.reshape(cd_list, [-1, tf.cast(logits.get_shape()[2], tf.int32)])
# def assign1(batch_cd_list, cd_list):
# batch_cd_list = cd_list
# print("this is where I am" + str(cd_list.get_shape()))
# return batch_cd_list
# def assign2(batch_cd_list, cd_list):
# print(batch_cd_list.get_shape())
# batch_cd_list = tf.concat([batch_cd_list, cd_list], axis=0)
# print("I am here as well")
# return batch_cd_list
# batch_cd_list = tf.cond(tf.equal(i, tf.constant(0)), lambda: assign1(batch_cd_list, cd_list), lambda: assign2(batch_cd_list, cd_list))
# print("see this: ", batch_cd_list)
# return [tf.add(i, 1), batch_cd_list]
# r = tf.while_loop(while_condition, body, [i, batch_cd_list],
# shape_invariants=[i.get_shape(), tf.TensorShape([None, logits.get_shape()[2]])])
# batch_cd = tf.reshape(batch_cd_list, [self.batch_size, max_time, tf.cast(logits.get_shape()[2], tf.int32)])
# """
# one_hot_target_output = tf.one_hot(target_output[0][0], logits.get_shape()[2])
# """
preds = tf.argmax(logits, axis=2)
one_hot_preds = tf.one_hot(preds, logits.get_shape()[2])
cum_preds = tf.cumsum(one_hot_preds, axis=0)
cum_preds = tf.slice(cum_preds, [0, 0, 0], [
max_time - 1, self.batch_size,
tf.cast(logits.get_shape()[2], tf.int32)
])
cum_preds = tf.concat([
tf.zeros(
[1, self.batch_size,
tf.cast(logits.get_shape()[2], tf.int32)]), cum_preds
],
axis=0)
# Now, we have the cumulative predictions tensor.
one_hot_targets = tf.one_hot(target_output, logits.get_shape()[2])
targets_test = tf.reshape(one_hot_targets, [
max_time, self.batch_size,
tf.cast(logits.get_shape()[2], tf.int32)
])
dist = tf.reduce_sum(one_hot_targets, axis=0, keep_dims=True)
rep_dist = tf.tile(dist, [max_time, 1, 1])
target_dist = tf.subtract(rep_dist, cum_preds)
target_dist = tf.maximum(
target_dist,
tf.zeros([
max_time, self.batch_size,
tf.cast(logits.get_shape()[2], tf.int32)
]))
# setting eos count to 1
target_dist_first = tf.slice(target_dist, [0, 0, 0],
[max_time, self.batch_size, 2])
target_dist_last = tf.slice(target_dist, [0, 0, 3], [
max_time, self.batch_size,
tf.cast(logits.get_shape()[2], tf.int32) - 3
])
target_dist = tf.concat(
[target_dist_first,
tf.ones([max_time, self.batch_size, 1])],
axis=2)
target_dist = tf.concat([target_dist, target_dist_last], axis=2)
# eos count has been set to 1
# Pushing in Puru's method for precision at k.
# Loss at false negatives = -log(p)
# Loss at false positives = -log(1-p)
k = 3
beta = 0.1
top_k_values, top_k_targets = tf.nn.top_k(target_dist, k=k)
top_k_predicted_values, top_k_predicted = tf.nn.top_k(logits, k=k)
false_negatives = tf.sets.set_difference(top_k_targets,
top_k_predicted)
false_positives = tf.sets.set_difference(top_k_predicted,
top_k_targets)
dense_fn = tf.sparse_tensor_to_dense(false_negatives)
one_hot_fn = tf.one_hot(indices=dense_fn,
depth=logits.get_shape()[2],
on_value=1.0)
target_k = tf.reduce_sum(one_hot_fn, axis=2)
print("target_k vector shape: ", target_k.get_shape())
dense_fp = tf.sparse_tensor_to_dense(false_positives)
one_hot_fp = tf.one_hot(indices=dense_fp,
depth=logits.get_shape()[2],
on_value=1.0)
predicted_k = tf.reduce_sum(one_hot_fp, axis=2)
# normalising the target distribution.
# Have tried softmax normalization and linear normalization.
target_sums = tf.reduce_sum(target_dist, axis=2, keep_dims=True)
reci_target_sums = tf.reciprocal(target_sums)
reci_target_sums_rep = tf.tile(
reci_target_sums,
[1, 1, tf.cast(logits.get_shape()[2], tf.int32)])
target_dist_norm = tf.multiply(target_dist, reci_target_sums_rep)
# target_dist_norm = tf.nn.softmax(target_dist)
one_minus_logits = tf.subtract(
tf.ones([
max_time, self.batch_size,
tf.cast(logits.get_shape()[2], tf.int32)
]), logits)
crossent_fn = tf.nn.softmax_cross_entropy_with_logits(labels=target_k,
logits=logits)
crossent_fp = tf.nn.softmax_cross_entropy_with_logits(
labels=predicted_k, logits=one_minus_logits)
# crossent_impl = tf.nn.softmax_cross_entropy_with_logits(
# labels=target_dist_norm, logits=logits)
crossent_impl = (crossent_fn + crossent_fp) / 2.0
####
# target_output_test = tf.reshape(target_output, [self.batch_size, max_time])
# print("reshape successful!!!!", target_output.get_shape())
crossent_orig = tf.nn.sparse_softmax_cross_entropy_with_logits(
labels=target_output, logits=logits)
target_weights = tf.sequence_mask(self.iterator.target_sequence_length,
max_time,
dtype=logits.dtype)
if self.time_major:
target_weights = tf.transpose(target_weights)
# cross entropy is a weighted combiation of original cross entropy and
# the one implemented by us (crossent_impl)
crossent = (1.0 - beta) * crossent_orig + beta * crossent_impl
loss = tf.reduce_sum(crossent * target_weights) / tf.to_float(
self.batch_size)
return loss
def initialize(self, sess, summary_writer, omega=5):
self.summary_writer = summary_writer
self.sess = sess
# placeholders
self.mask = U.get_placeholder("mask", self.dtype, (None, 1))
# Tf vars
self.observations_ph = U.get_placeholder(
dtype=self.dtype,
name="obs",
shape=(None, self.env.observation_space_size))
# one hot tensor
self.actions_one_hot_ph = U.get_placeholder(
name="action_one_hot",
dtype=self.dtype,
shape=(None, self.env.action_space_size),
)
# -1, 0, +1 tensor
# or -1 +1 tensor
# actual action taken or
# all actions possible
# e.g. [-1, 1; -1, 1 ...]
self.actions_ph = U.get_placeholder(name="action",
dtype=self.dtype,
shape=(None, self.env.n_actions))
self.rewards_ph = U.get_placeholder(dtype=self.dtype,
name="rewards",
shape=(None, 1))
self.returns_ph = U.get_placeholder(name="returns",
dtype=self.dtype,
shape=(None, ))
self.timesteps_ph = U.get_placeholder(name="timestep",
dtype=self.dtype,
shape=(None, ))
# next state centered on the previous one
self.next_states_ph = U.get_placeholder(
name="next_states",
dtype=self.dtype,
shape=(None, self.env.observation_space_size),
)
self.optimizer = get_tf_optimizer("adam")
theta = np.random.rand()
policy_tf, log_prob_policy = self.policy(self.observations_ph, theta)
model_log_prob_tf, model_prob_tf = self.model(
self.observations_ph,
self.actions_ph,
self.next_states_ph,
initial_omega=omega,
actions_one_hot=self.actions_one_hot_ph,
sess=sess,
summary_writer=summary_writer,
)
policy_prob_taken_ac = tf.reduce_sum(policy_tf *
self.actions_one_hot_ph,
axis=1,
keepdims=True)
model_prob_taken_ac = tf.reduce_sum(model_prob_tf *
self.actions_one_hot_ph,
axis=1,
keepdims=True)
log_prob = tf.log(model_prob_taken_ac * policy_prob_taken_ac + 1e-20)
# split using trajectory size
splitted_probs = tf.concat(tf.split(tf.transpose(log_prob),
self.n_trajectories,
axis=1),
axis=0)
splitted_mask = tf.concat(tf.split(tf.transpose(self.mask),
self.n_trajectories,
axis=1),
axis=0)
splitted_reward = tf.concat(tf.split(tf.transpose(self.rewards_ph),
self.n_trajectories,
axis=1),
axis=0)
# this is the cumulative sum from 0 to t for each timestep t along each trajectory
cum_sum_probs = tf.cumsum(splitted_probs, axis=1)
# apply the mask
cum_sum_probs = tf.multiply(cum_sum_probs, splitted_mask)
# product between p and discounted reward
p_times_rew = tf.multiply(cum_sum_probs, splitted_reward)
# sum over the timesteps
sum_H = tf.reduce_sum(p_times_rew,
axis=1,
name="Final_sum_over_timesteps")
# mean over episodes
mean_N = tf.reduce_mean(sum_H, axis=0)
# compute and apply gradients
self.grad = tf.gradients(
mean_N, self.model.trainable_vars + self.policy.trainable_vars)
# Summary things
self.sum_reward = tf.reduce_sum(splitted_reward, axis=1)
self.mean_reward = tf.reduce_mean(self.sum_reward)
self.mean_timesteps = tf.reduce_mean(self.timesteps_ph)
# plot purpose
mean_ret = tf.reduce_mean(self.returns_ph)
mean_ts = tf.reduce_mean(self.timesteps_ph)
ret_sum = tf.summary.scalar("Return", mean_ret)
ts_sum = tf.summary.scalar("Timesteps", mean_ts)
om_sum = tf.summary.scalar("Omega", tf.norm(self.model.get_omega()))
# th_sum = tf.summary.scalar("Theta",tf.norm(self.policy.getTheta()))
self.summary_writer.add_graph(sess.graph)
self.summarize = tf.summary.merge([ret_sum, ts_sum,
om_sum]) # th_sum])
# minimize op
# change sign since we want to maximize
self.minimize_op = self.optimizer.minimize(
-mean_N,
var_list=self.model.trainable_vars + self.policy.trainable_vars)
self.policy_tf = policy_tf
self.model_tf = model_prob_tf
self.log_prob = log_prob
def _log_prob(self, x):
n = self.logits.shape
k = x.shape
wz = tf.gather(self.probs, x, axis=-1)
W = tf.cumsum(wz, reverse=True)
return tf.reduce_sum(wz - tf.math.log(W))
'outputs': [
{
'name': 'coll',
# yhat
# :param pre_yhat: [batch_size, H]
# :param obs_vec: {name : [batch_size, 1]}
'yhat': lambda pre_yhat, obs_vec: tf.nn.sigmoid(pre_yhat),
# yhat_label
# :param rewards: [batch_size, N]
# :param dones: [batch_size, N+1]
# :param goals: {name: [batch_size, 1]}
# :param target_obs_vec: [batch_size, N]
# :param gamma: scalar
'yhat_label': lambda rewards, dones, goals, future_goals, target_obs_vec, gamma: \
tf.cast(tf.cumsum(target_obs_vec['coll'], axis=1) >= 1.0, tf.float32),
# yhat training cost
'yhat_loss': 'xentropy', # <mse / huber / xentropy>
'yhat_loss_weight': 1.0, # how much to weight this loss compared to other losses
'yhat_loss_use_pre': True, # use the pre-activation for the loss? needed for xentropy
'yhat_loss_xentropy_posweight': 10.0, # larger value --> false negatives cost more
# bhat
# :param pre_bhat: [batch_size, H]
# :param obs_vec: {name: [batch_size, 1]}
'bhat': None,
# bhat_label
# :param rewards: [batch_size, N]
# :param dones: [batch_size, N+1]
def calculate(self, quantity: tf.Tensor):
each = tf.multiply(quantity, tf.constant(0))
total = tf.cumsum(each)
return total
def render_nd_bboxes_tf_spreading(elems, target_shape, ndim=2):
"""
elems: tensor of size [..., n_boxes, 2*ndim + val_dim], where in the last dimension,
there are packed edge coordinates and values (of val_dim) to be filled in the specified box.
target_shape: list/tuple of ndim entries.
returns: rendered image of size [elems(...), target_shape..., val_dim]
('elems(...)' usually means batch_size)
"""
assert_shape_ndim = tf.Assert(tf.equal(tf.size(target_shape), ndim),
[target_shape])
assert_nonempty_data = tf.Assert(tf.greater(tf.shape(elems)[-1], 2 * ndim),
[elems])
with tf.control_dependencies([assert_shape_ndim, assert_nonempty_data]):
"""
+1 ...... -1 ++++++ ++++++
........... ...... ++++++
........... -> ...... -> ++++++
........... ------ ++++++
-1 +1
in 3d there must be another wall of minuses. looking like that:
- +
.....
+ -
so when indexing [0, 1] to ltrb... pluses are when there is even number of 0s, - when odd.
"""
el_ndim = len(elems.shape)
# we do not access this property in tensorflow runtime, but in 'compile time', because, well,
# number of dimensions
# should be known before
assert el_ndim >= 2 and el_ndim <= 3, "elements should be in the form of [batch, n, coordinates] or [n, " \
"coordinates]"
if el_ndim == 3: # we use batch_size dimension also!
bboxes_per_batch = tf.shape(elems)[1]
batch_size = tf.shape(elems)[
0] # should be the same as image_input.shape[0]
index_to_batch = tf.tile(tf.expand_dims(tf.range(batch_size), -1),
(1, bboxes_per_batch))
index_to_batch = tf.reshape(index_to_batch, (-1, 1))
else:
index_to_batch = None
val_vector_size = tf.shape(elems)[-1] - 2 * ndim
corner_ids = list(itertools.product([0, 1], repeat=ndim))
corners_lists = []
corners_values = []
for corner in corner_ids:
plus = sum(corner) % 2 == 0
id_from_corner = [
i + ndim * c for i, c in enumerate(corner)
] # indexes a corner into [left, top, right, bottom] notation
corner_coord = tf.gather(elems[..., 0:2 * ndim],
id_from_corner,
axis=-1)
corner_value = elems[..., 2 * ndim:] * (
1 if plus else -1) # last dimension is == val_vector_size
if index_to_batch is not None:
# if the operation is called in batches, remember to rehape it all into one long list for scatter_nd
# and add (concatenate) the batch ids
corner_coord = tf.concat(
[index_to_batch,
tf.reshape(corner_coord, (-1, 2))],
axis=-1)
corner_value = tf.reshape(corner_value, (-1, val_vector_size))
corners_lists.append(corner_coord)
corners_values.append(corner_value)
indices = tf.concat(corners_lists, axis=0)
updates = tf.concat(corners_values, axis=0)
shape = tf.concat(
[tf.shape(elems)[:-2], target_shape, [val_vector_size]], axis=0)
dense_orig = tf.scatter_nd(
indices,
updates,
shape=shape,
)
dense = dense_orig
for dim in range(ndim):
# we want to start from the axis before the last one. The last one is the value dimension, and
# the first dimensions hidden in the '...' might be the batched dimensions
dense = tf.cumsum(dense,
axis=-2 - dim,
exclusive=False,
reverse=False,
name=None)
return dense
def learn(
make_env,
make_policy,
*,
n_episodes,
horizon,
delta,
gamma,
max_iters,
sampler=None,
use_natural_gradient=False, #can be 'exact', 'approximate'
fisher_reg=1e-2,
iw_method='is',
iw_norm='none',
bound='J',
line_search_type='parabola',
save_weights=False,
improvement_tol=0.,
center_return=False,
render_after=None,
max_offline_iters=100,
callback=None,
clipping=False,
entropy='none',
positive_return=False,
reward_clustering='none'):
np.set_printoptions(precision=3)
max_samples = horizon * n_episodes
if line_search_type == 'binary':
line_search = line_search_binary
elif line_search_type == 'parabola':
line_search = line_search_parabola
else:
raise ValueError()
# Building the environment
env = make_env()
ob_space = env.observation_space
ac_space = env.action_space
# Building the policy
pi = make_policy('pi', ob_space, ac_space)
oldpi = make_policy('oldpi', ob_space, ac_space)
all_var_list = pi.get_trainable_variables()
var_list = [
v for v in all_var_list if v.name.split('/')[1].startswith('pol')
]
shapes = [U.intprod(var.get_shape().as_list()) for var in var_list]
n_parameters = sum(shapes)
# Placeholders
ob_ = ob = U.get_placeholder_cached(name='ob')
ac_ = pi.pdtype.sample_placeholder([max_samples], name='ac')
mask_ = tf.placeholder(dtype=tf.float32, shape=(max_samples), name='mask')
rew_ = tf.placeholder(dtype=tf.float32, shape=(max_samples), name='rew')
disc_rew_ = tf.placeholder(dtype=tf.float32,
shape=(max_samples),
name='disc_rew')
gradient_ = tf.placeholder(dtype=tf.float32,
shape=(n_parameters, 1),
name='gradient')
iter_number_ = tf.placeholder(dtype=tf.int32, name='iter_number')
losses_with_name = []
# Policy densities
target_log_pdf = pi.pd.logp(ac_)
behavioral_log_pdf = oldpi.pd.logp(ac_)
log_ratio = target_log_pdf - behavioral_log_pdf
# Split operations
disc_rew_split = tf.stack(tf.split(disc_rew_ * mask_, n_episodes))
rew_split = tf.stack(tf.split(rew_ * mask_, n_episodes))
log_ratio_split = tf.stack(tf.split(log_ratio * mask_, n_episodes))
target_log_pdf_split = tf.stack(
tf.split(target_log_pdf * mask_, n_episodes))
behavioral_log_pdf_split = tf.stack(
tf.split(behavioral_log_pdf * mask_, n_episodes))
mask_split = tf.stack(tf.split(mask_, n_episodes))
# Renyi divergence
emp_d2_split = tf.stack(
tf.split(pi.pd.renyi(oldpi.pd, 2) * mask_, n_episodes))
emp_d2_cum_split = tf.reduce_sum(emp_d2_split, axis=1)
empirical_d2 = tf.reduce_mean(tf.exp(emp_d2_cum_split))
# Return
ep_return = tf.reduce_sum(mask_split * disc_rew_split, axis=1)
if clipping:
rew_split = tf.clip_by_value(rew_split, -1, 1)
if center_return:
ep_return = ep_return - tf.reduce_mean(ep_return)
rew_split = rew_split - (tf.reduce_sum(rew_split) /
(tf.reduce_sum(mask_split) + 1e-24))
discounter = [pow(gamma, i) for i in range(0, horizon)] # Decreasing gamma
discounter_tf = tf.constant(discounter)
disc_rew_split = rew_split * discounter_tf
return_mean = tf.reduce_mean(ep_return)
return_std = U.reduce_std(ep_return)
return_max = tf.reduce_max(ep_return)
return_min = tf.reduce_min(ep_return)
return_abs_max = tf.reduce_max(tf.abs(ep_return))
return_step_max = tf.reduce_max(tf.abs(rew_split)) # Max step reward
return_step_mean = tf.abs(tf.reduce_mean(rew_split))
positive_step_return_max = tf.maximum(0.0, tf.reduce_max(rew_split))
negative_step_return_max = tf.maximum(0.0, tf.reduce_max(-rew_split))
return_step_maxmin = tf.abs(positive_step_return_max -
negative_step_return_max)
# Reward clustering
rew_clustering_options = reward_clustering.split(':')
if reward_clustering == 'none':
pass # Do nothing
elif rew_clustering_options[0] == 'global':
assert len(
rew_clustering_options
) == 2, "Reward clustering: Provide the correct number of parameters"
N = int(rew_clustering_options[1])
tf.add_to_collection(
'prints',
tf.Print(ep_return, [ep_return], 'ep_return', summarize=20))
global_rew_min = tf.Variable(float('+inf'), trainable=False)
global_rew_max = tf.Variable(float('-inf'), trainable=False)
rew_min = tf.reduce_min(ep_return)
rew_max = tf.reduce_max(ep_return)
global_rew_min = tf.assign(global_rew_min,
tf.minimum(global_rew_min, rew_min))
global_rew_max = tf.assign(global_rew_max,
tf.maximum(global_rew_max, rew_max))
interval_size = (global_rew_max - global_rew_min) / N
ep_return = tf.floordiv(ep_return, interval_size) * interval_size
elif rew_clustering_options[0] == 'batch':
assert len(
rew_clustering_options
) == 2, "Reward clustering: Provide the correct number of parameters"
N = int(rew_clustering_options[1])
rew_min = tf.reduce_min(ep_return)
rew_max = tf.reduce_max(ep_return)
interval_size = (rew_max - rew_min) / N
ep_return = tf.floordiv(ep_return, interval_size) * interval_size
elif rew_clustering_options[0] == 'manual':
assert len(
rew_clustering_options
) == 4, "Reward clustering: Provide the correct number of parameters"
N, rew_min, rew_max = map(int, rew_clustering_options[1:])
interval_size = (rew_max - rew_min) / N
# Clip to avoid overflow and cluster
ep_return = tf.clip_by_value(ep_return, rew_min, rew_max)
ep_return = tf.floordiv(ep_return, interval_size) * interval_size
else:
raise Exception('Unrecognized reward clustering scheme.')
losses_with_name.extend([(return_mean, 'InitialReturnMean'),
(return_max, 'InitialReturnMax'),
(return_min, 'InitialReturnMin'),
(return_std, 'InitialReturnStd'),
(empirical_d2, 'EmpiricalD2'),
(return_step_max, 'ReturnStepMax'),
(return_step_maxmin, 'ReturnStepMaxmin')])
if iw_method == 'pdis':
# log_ratio_split cumulative sum
log_ratio_cumsum = tf.cumsum(log_ratio_split, axis=1)
# Exponentiate
ratio_cumsum = tf.exp(log_ratio_cumsum)
# Multiply by the step-wise reward (not episode)
ratio_reward = ratio_cumsum * disc_rew_split
# Average on episodes
ratio_reward_per_episode = tf.reduce_sum(ratio_reward, axis=1)
w_return_mean = tf.reduce_sum(ratio_reward_per_episode,
axis=0) / n_episodes
# Get d2(w0:t) with mask
d2_w_0t = tf.exp(tf.cumsum(emp_d2_split,
axis=1)) * mask_split # LEAVE THIS OUTSIDE
# Sum d2(w0:t) over timesteps
episode_d2_0t = tf.reduce_sum(d2_w_0t, axis=1)
# Sample variance
J_sample_variance = (1 / (n_episodes - 1)) * tf.reduce_sum(
tf.square(ratio_reward_per_episode - w_return_mean))
losses_with_name.append((J_sample_variance, 'J_sample_variance'))
losses_with_name.extend([(tf.reduce_max(ratio_cumsum), 'MaxIW'),
(tf.reduce_min(ratio_cumsum), 'MinIW'),
(tf.reduce_mean(ratio_cumsum), 'MeanIW'),
(U.reduce_std(ratio_cumsum), 'StdIW')])
losses_with_name.extend([(tf.reduce_max(d2_w_0t), 'MaxD2w0t'),
(tf.reduce_min(d2_w_0t), 'MinD2w0t'),
(tf.reduce_mean(d2_w_0t), 'MeanD2w0t'),
(U.reduce_std(d2_w_0t), 'StdD2w0t')])
elif iw_method == 'is':
iw = tf.exp(tf.reduce_sum(log_ratio_split, axis=1))
if iw_norm == 'none':
iwn = iw / n_episodes
w_return_mean = tf.reduce_sum(iwn * ep_return)
J_sample_variance = (1 / (n_episodes - 1)) * tf.reduce_sum(
tf.square(iw * ep_return - w_return_mean))
losses_with_name.append((J_sample_variance, 'J_sample_variance'))
elif iw_norm == 'sn':
iwn = iw / tf.reduce_sum(iw)
w_return_mean = tf.reduce_sum(iwn * ep_return)
elif iw_norm == 'regression':
iwn = iw / n_episodes
mean_iw = tf.reduce_mean(iw)
beta = tf.reduce_sum(
(iw - mean_iw) * ep_return * iw) / (tf.reduce_sum(
(iw - mean_iw)**2) + 1e-24)
w_return_mean = tf.reduce_mean(iw * ep_return - beta * (iw - 1))
else:
raise NotImplementedError()
ess_classic = tf.linalg.norm(iw, 1)**2 / tf.linalg.norm(iw, 2)**2
sqrt_ess_classic = tf.linalg.norm(iw, 1) / tf.linalg.norm(iw, 2)
ess_renyi = n_episodes / empirical_d2
losses_with_name.extend([(tf.reduce_max(iwn), 'MaxIWNorm'),
(tf.reduce_min(iwn), 'MinIWNorm'),
(tf.reduce_mean(iwn), 'MeanIWNorm'),
(U.reduce_std(iwn), 'StdIWNorm'),
(tf.reduce_max(iw), 'MaxIW'),
(tf.reduce_min(iw), 'MinIW'),
(tf.reduce_mean(iw), 'MeanIW'),
(U.reduce_std(iw), 'StdIW'),
(ess_classic, 'ESSClassic'),
(ess_renyi, 'ESSRenyi')])
elif iw_method == 'rbis':
# Get pdfs for episodes
target_log_pdf_episode = tf.reduce_sum(target_log_pdf_split, axis=1)
behavioral_log_pdf_episode = tf.reduce_sum(behavioral_log_pdf_split,
axis=1)
# Normalize log_proba (avoid as overflows as possible)
normalization_factor = tf.reduce_mean(
tf.stack([target_log_pdf_episode, behavioral_log_pdf_episode]))
target_norm_log_pdf_episode = target_log_pdf_episode - normalization_factor
behavioral_norm_log_pdf_episode = behavioral_log_pdf_episode - normalization_factor
# Exponentiate
target_pdf_episode = tf.clip_by_value(
tf.cast(tf.exp(target_norm_log_pdf_episode), tf.float64), 1e-300,
1e+300)
behavioral_pdf_episode = tf.clip_by_value(
tf.cast(tf.exp(behavioral_norm_log_pdf_episode), tf.float64),
1e-300, 1e+300)
tf.add_to_collection(
'asserts',
tf.assert_positive(target_pdf_episode, name='target_pdf_positive'))
tf.add_to_collection(
'asserts',
tf.assert_positive(behavioral_pdf_episode,
name='behavioral_pdf_positive'))
# Compute the merging matrix (reward-clustering) and the number of clusters
reward_unique, reward_indexes = tf.unique(ep_return)
episode_clustering_matrix = tf.cast(
tf.one_hot(reward_indexes, n_episodes), tf.float64)
max_index = tf.reduce_max(reward_indexes) + 1
trajectories_per_cluster = tf.reduce_sum(episode_clustering_matrix,
axis=0)[:max_index]
tf.add_to_collection(
'asserts',
tf.assert_positive(tf.reduce_sum(episode_clustering_matrix,
axis=0)[:max_index],
name='clustering_matrix'))
# Get the clustered pdfs
clustered_target_pdf = tf.matmul(
tf.reshape(target_pdf_episode, (1, -1)),
episode_clustering_matrix)[0][:max_index]
clustered_behavioral_pdf = tf.matmul(
tf.reshape(behavioral_pdf_episode, (1, -1)),
episode_clustering_matrix)[0][:max_index]
tf.add_to_collection(
'asserts',
tf.assert_positive(clustered_target_pdf,
name='clust_target_pdf_positive'))
tf.add_to_collection(
'asserts',
tf.assert_positive(clustered_behavioral_pdf,
name='clust_behavioral_pdf_positive'))
# Compute the J
ratio_clustered = clustered_target_pdf / clustered_behavioral_pdf
#ratio_reward = tf.cast(ratio_clustered, tf.float32) * reward_unique # ---- No cluster cardinality
ratio_reward = tf.cast(ratio_clustered,
tf.float32) * reward_unique * tf.cast(
trajectories_per_cluster,
tf.float32) # ---- Cluster cardinality
#w_return_mean = tf.reduce_sum(ratio_reward) / tf.cast(max_index, tf.float32) # ---- No cluster cardinality
w_return_mean = tf.reduce_sum(ratio_reward) / tf.cast(
n_episodes, tf.float32) # ---- Cluster cardinality
# Divergences
ess_classic = tf.linalg.norm(ratio_reward, 1)**2 / tf.linalg.norm(
ratio_reward, 2)**2
sqrt_ess_classic = tf.linalg.norm(ratio_reward, 1) / tf.linalg.norm(
ratio_reward, 2)
ess_renyi = n_episodes / empirical_d2
# Summaries
losses_with_name.extend([(tf.reduce_max(ratio_clustered), 'MaxIW'),
(tf.reduce_min(ratio_clustered), 'MinIW'),
(tf.reduce_mean(ratio_clustered), 'MeanIW'),
(U.reduce_std(ratio_clustered), 'StdIW'),
(1 - (max_index / n_episodes),
'RewardCompression'),
(ess_classic, 'ESSClassic'),
(ess_renyi, 'ESSRenyi')])
else:
raise NotImplementedError()
if bound == 'J':
bound_ = w_return_mean
elif bound == 'std-d2':
bound_ = w_return_mean - tf.sqrt(
(1 - delta) / (delta * ess_renyi)) * return_std
elif bound == 'max-d2':
var_estimate = tf.sqrt(
(1 - delta) / (delta * ess_renyi)) * return_abs_max
bound_ = w_return_mean - tf.sqrt(
(1 - delta) / (delta * ess_renyi)) * return_abs_max
elif bound == 'max-ess':
bound_ = w_return_mean - tf.sqrt(
(1 - delta) / delta) / sqrt_ess_classic * return_abs_max
elif bound == 'std-ess':
bound_ = w_return_mean - tf.sqrt(
(1 - delta) / delta) / sqrt_ess_classic * return_std
elif bound == 'pdis-max-d2':
# Discount factor
if gamma >= 1:
discounter = [
float(1 + 2 * (horizon - t - 1)) for t in range(0, horizon)
]
else:
def f(t):
return pow(gamma, 2 * t) + (
2 * pow(gamma, t) *
(pow(gamma, t + 1) - pow(gamma, horizon))) / (1 - gamma)
discounter = [f(t) for t in range(0, horizon)]
discounter_tf = tf.constant(discounter)
mean_episode_d2 = tf.reduce_sum(
d2_w_0t, axis=0) / (tf.reduce_sum(mask_split, axis=0) + 1e-24)
discounted_d2 = mean_episode_d2 * discounter_tf # Discounted d2
discounted_total_d2 = tf.reduce_sum(discounted_d2,
axis=0) # Sum over time
bound_ = w_return_mean - tf.sqrt(
(1 - delta) * discounted_total_d2 /
(delta * n_episodes)) * return_step_max
elif bound == 'pdis-mean-d2':
# Discount factor
if gamma >= 1:
discounter = [
float(1 + 2 * (horizon - t - 1)) for t in range(0, horizon)
]
else:
def f(t):
return pow(gamma, 2 * t) + (
2 * pow(gamma, t) *
(pow(gamma, t + 1) - pow(gamma, horizon))) / (1 - gamma)
discounter = [f(t) for t in range(0, horizon)]
discounter_tf = tf.constant(discounter)
mean_episode_d2 = tf.reduce_sum(
d2_w_0t, axis=0) / (tf.reduce_sum(mask_split, axis=0) + 1e-24)
discounted_d2 = mean_episode_d2 * discounter_tf # Discounted d2
discounted_total_d2 = tf.reduce_sum(discounted_d2,
axis=0) # Sum over time
bound_ = w_return_mean - tf.sqrt(
(1 - delta) * discounted_total_d2 /
(delta * n_episodes)) * return_step_mean
else:
raise NotImplementedError()
# Policy entropy for exploration
ent = pi.pd.entropy()
meanent = tf.reduce_mean(ent)
losses_with_name.append((meanent, 'MeanEntropy'))
# Add policy entropy bonus
if entropy != 'none':
scheme, v1, v2 = entropy.split(':')
if scheme == 'step':
entcoeff = tf.cond(iter_number_ < int(v2), lambda: float(v1),
lambda: float(0.0))
losses_with_name.append((entcoeff, 'EntropyCoefficient'))
entbonus = entcoeff * meanent
bound_ = bound_ + entbonus
elif scheme == 'lin':
ip = tf.cast(iter_number_ / max_iters, tf.float32)
entcoeff_decay = tf.maximum(
0.0,
float(v2) + (float(v1) - float(v2)) * (1.0 - ip))
losses_with_name.append((entcoeff_decay, 'EntropyCoefficient'))
entbonus = entcoeff_decay * meanent
bound_ = bound_ + entbonus
elif scheme == 'exp':
ent_f = tf.exp(
-tf.abs(tf.reduce_mean(iw) - 1) * float(v2)) * float(v1)
losses_with_name.append((ent_f, 'EntropyCoefficient'))
bound_ = bound_ + ent_f * meanent
else:
raise Exception('Unrecognized entropy scheme.')
losses_with_name.append((w_return_mean, 'ReturnMeanIW'))
losses_with_name.append((bound_, 'Bound'))
losses, loss_names = map(list, zip(*losses_with_name))
if use_natural_gradient:
p = tf.placeholder(dtype=tf.float32, shape=[None])
target_logpdf_episode = tf.reduce_sum(target_log_pdf_split *
mask_split,
axis=1)
grad_logprob = U.flatgrad(
tf.stop_gradient(iwn) * target_logpdf_episode, var_list)
dot_product = tf.reduce_sum(grad_logprob * p)
hess_logprob = U.flatgrad(dot_product, var_list)
compute_linear_operator = U.function([p, ob_, ac_, disc_rew_, mask_],
[-hess_logprob])
assign_old_eq_new = U.function(
[], [],
updates=[
tf.assign(oldv, newv)
for (oldv,
newv) in zipsame(oldpi.get_variables(), pi.get_variables())
])
assert_ops = tf.group(*tf.get_collection('asserts'))
print_ops = tf.group(*tf.get_collection('prints'))
compute_lossandgrad = U.function(
[ob_, ac_, rew_, disc_rew_, mask_, iter_number_],
losses + [U.flatgrad(bound_, var_list), assert_ops, print_ops])
compute_grad = U.function(
[ob_, ac_, rew_, disc_rew_, mask_, iter_number_],
[U.flatgrad(bound_, var_list), assert_ops, print_ops])
compute_bound = U.function(
[ob_, ac_, rew_, disc_rew_, mask_, iter_number_],
[bound_, assert_ops, print_ops])
compute_losses = U.function(
[ob_, ac_, rew_, disc_rew_, mask_, iter_number_], losses)
#compute_temp = U.function([ob_, ac_, rew_, disc_rew_, mask_], [ratio_cumsum, discounted_ratio])
set_parameter = U.SetFromFlat(var_list)
get_parameter = U.GetFlat(var_list)
if sampler is None:
seg_gen = traj_segment_generator(pi,
env,
n_episodes,
horizon,
stochastic=True)
sampler = type("SequentialSampler", (object, ), {
"collect": lambda self, _: seg_gen.__next__()
})()
U.initialize()
# Starting optimizing
episodes_so_far = 0
timesteps_so_far = 0
iters_so_far = 0
tstart = time.time()
lenbuffer = deque(maxlen=n_episodes)
rewbuffer = deque(maxlen=n_episodes)
while True:
iters_so_far += 1
if render_after is not None and iters_so_far % render_after == 0:
if hasattr(env, 'render'):
render(env, pi, horizon)
if callback:
callback(locals(), globals())
if iters_so_far >= max_iters:
print('Finised...')
break
logger.log('********** Iteration %i ************' % iters_so_far)
theta = get_parameter()
with timed('sampling'):
seg = sampler.collect(theta)
add_disc_rew(seg, gamma)
lens, rets = seg['ep_lens'], seg['ep_rets']
lenbuffer.extend(lens)
rewbuffer.extend(rets)
episodes_so_far += len(lens)
timesteps_so_far += sum(lens)
args = ob, ac, rew, disc_rew, mask, iter_number = seg['ob'], seg[
'ac'], seg['rew'], seg['disc_rew'], seg['mask'], iters_so_far
assign_old_eq_new()
def evaluate_loss():
loss = compute_bound(*args)
return loss[0]
def evaluate_gradient():
gradient = compute_grad(*args)
return gradient[0]
if use_natural_gradient:
def evaluate_fisher_vector_prod(x):
return compute_linear_operator(x, *args)[0] + fisher_reg * x
def evaluate_natural_gradient(g):
return cg(evaluate_fisher_vector_prod,
g,
cg_iters=10,
verbose=0)
else:
evaluate_natural_gradient = None
with timed('summaries before'):
logger.record_tabular("Iteration", iters_so_far)
logger.record_tabular("InitialBound", evaluate_loss())
logger.record_tabular("EpLenMean", np.mean(lenbuffer))
logger.record_tabular("EpRewMean", np.mean(rewbuffer))
logger.record_tabular("EpThisIter", len(lens))
logger.record_tabular("EpisodesSoFar", episodes_so_far)
logger.record_tabular("TimestepsSoFar", timesteps_so_far)
logger.record_tabular("TimeElapsed", time.time() - tstart)
if save_weights:
logger.record_tabular('Weights', str(get_parameter()))
import pickle
file = open('checkpoint.pkl', 'wb')
pickle.dump(theta, file)
with timed("offline optimization"):
theta, improvement = optimize_offline(
theta,
set_parameter,
line_search,
evaluate_loss,
evaluate_gradient,
evaluate_natural_gradient,
max_offline_ite=max_offline_iters)
set_parameter(theta)
with timed('summaries after'):
meanlosses = np.array(compute_losses(*args))
for (lossname, lossval) in zip(loss_names, meanlosses):
logger.record_tabular(lossname, lossval)
logger.dump_tabular()
env.close()
def _static_subsample(self, indicator, batch_size, labels):
"""Returns subsampled minibatch.
Args:
indicator: boolean tensor of shape [N] whose True entries can be sampled.
N should be a complie time constant.
batch_size: desired batch size. This scalar cannot be None.
labels: boolean tensor of shape [N] denoting positive(=True) and negative
(=False) examples. N should be a complie time constant.
Returns:
sampled_idx_indicator: boolean tensor of shape [N], True for entries which
are sampled. It ensures the length of output of the subsample is always
batch_size, even when number of examples set to True in indicator is
less than batch_size.
Raises:
ValueError: if labels and indicator are not 1D boolean tensors.
"""
# Check if indicator and labels have a static size.
if not indicator.shape.is_fully_defined():
raise ValueError(
'indicator must be static in shape when is_static is'
'True')
if not labels.shape.is_fully_defined():
raise ValueError('labels must be static in shape when is_static is'
'True')
if not isinstance(batch_size, int):
raise ValueError(
'batch_size has to be an integer when is_static is'
'True.')
input_length = tf.shape(indicator)[0]
# Set the number of examples set True in indicator to be at least
# batch_size.
num_true_sampled = tf.reduce_sum(tf.cast(indicator, tf.float32))
additional_false_sample = tf.less_equal(
tf.cumsum(tf.cast(tf.logical_not(indicator), tf.float32)),
batch_size - num_true_sampled)
indicator = tf.logical_or(indicator, additional_false_sample)
# Shuffle indicator and label. Need to store the permutation to restore the
# order post sampling.
permutation = tf.random_shuffle(tf.range(input_length))
indicator = ops.matmul_gather_on_zeroth_axis(
tf.cast(indicator, tf.float32), permutation)
labels = ops.matmul_gather_on_zeroth_axis(tf.cast(labels, tf.float32),
permutation)
# index (starting from 1) when indicator is True, 0 when False
indicator_idx = tf.where(tf.cast(indicator, tf.bool),
tf.range(1, input_length + 1),
tf.zeros(input_length, tf.int32))
# Replace -1 for negative, +1 for positive labels
signed_label = tf.where(
tf.cast(labels, tf.bool), tf.ones(input_length, tf.int32),
tf.scalar_mul(-1, tf.ones(input_length, tf.int32)))
# negative of index for negative label, positive index for positive label,
# 0 when indicator is False.
signed_indicator_idx = tf.multiply(indicator_idx, signed_label)
sorted_signed_indicator_idx = tf.nn.top_k(signed_indicator_idx,
input_length,
sorted=True).values
[num_positive_samples, num_negative_samples
] = self._get_num_pos_neg_samples(sorted_signed_indicator_idx,
batch_size)
sampled_idx = self._get_values_from_start_and_end(
sorted_signed_indicator_idx, num_positive_samples,
num_negative_samples, batch_size)
# Shift the indices to start from 0 and remove any samples that are set as
# False.
sampled_idx = tf.abs(sampled_idx) - tf.ones(batch_size, tf.int32)
sampled_idx = tf.multiply(
tf.cast(tf.greater_equal(sampled_idx, tf.constant(0)), tf.int32),
sampled_idx)
sampled_idx_indicator = tf.cast(
tf.reduce_sum(tf.one_hot(sampled_idx, depth=input_length), axis=0),
tf.bool)
# project back the order based on stored permutations
reprojections = tf.one_hot(permutation,
depth=input_length,
dtype=tf.float32)
return tf.cast(
tf.tensordot(tf.cast(sampled_idx_indicator, tf.float32),
reprojections,
axes=[0, 0]), tf.bool)
def row_lengths_to_splits(row_lengths):
return tf.pad(tf.cumsum(row_lengths), [[1, 0]])
def refine_stage(self,
input_img_batch,
gtboxes_batch_r,
gthead_quadrant,
gt_smooth_label,
box_pred_list,
cls_prob_list,
proposal_list,
angle_cls_list,
feature_pyramid,
gpu_id,
pos_threshold,
neg_threshold,
stage,
proposal_filter=False):
with tf.variable_scope('refine_feature_pyramid{}'.format(stage)):
refine_feature_pyramid = {}
refine_boxes_list = []
# refine_boxes_angle_list = []
for box_pred, cls_prob, proposal, angle_prob, stride, level in \
zip(box_pred_list, cls_prob_list, proposal_list, angle_cls_list,
cfgs.ANCHOR_STRIDE, cfgs.LEVEL):
if proposal_filter:
box_pred = tf.reshape(
box_pred, [-1, self.num_anchors_per_location, 5])
proposal = tf.reshape(proposal, [
-1, self.num_anchors_per_location,
5 if self.method == 'R' else 4
])
cls_prob = tf.reshape(
cls_prob,
[-1, self.num_anchors_per_location, cfgs.CLASS_NUM])
cls_max_prob = tf.reduce_max(cls_prob, axis=-1)
box_pred_argmax = tf.cast(
tf.reshape(tf.argmax(cls_max_prob, axis=-1), [-1, 1]),
tf.int32)
indices = tf.cast(
tf.cumsum(tf.ones_like(box_pred_argmax), axis=0),
tf.int32) - tf.constant(1, tf.int32)
indices = tf.concat([indices, box_pred_argmax], axis=-1)
box_pred = tf.reshape(tf.gather_nd(box_pred, indices),
[-1, 5])
proposal = tf.reshape(tf.gather_nd(proposal, indices),
[-1, 5 if self.method == 'R' else 4])
if cfgs.METHOD == 'H':
x_c = (proposal[:, 2] + proposal[:, 0]) / 2
y_c = (proposal[:, 3] + proposal[:, 1]) / 2
h = proposal[:, 2] - proposal[:, 0] + 1
w = proposal[:, 3] - proposal[:, 1] + 1
theta = -90 * tf.ones_like(x_c)
proposal = tf.transpose(
tf.stack([x_c, y_c, w, h, theta]))
if cfgs.ANGLE_RANGE == 180:
proposal = coordinate90_2_180_tf(proposal,
is_radian=False,
change_range=True)
# bboxes = bbox_transform.rbbox_transform_inv(boxes=proposal, deltas=box_pred)
# if cfgs.ANGLE_RANGE == 180:
# bboxes = coordinate90_2_180_tf(bboxes, is_radian=False, change_range=True)
else:
box_pred = tf.reshape(box_pred, [-1, 5])
proposal = tf.reshape(proposal, [-1, 5])
bboxes = bbox_transform.rbbox_transform_inv(boxes=proposal,
deltas=box_pred)
if angle_prob is not None:
angle_cls = tf.cast(
tf.argmax(tf.sigmoid(angle_prob), axis=1), tf.float32)
angle_cls = (tf.reshape(angle_cls, [
-1,
]) * -1 - 0.5) * cfgs.OMEGA
x, y, w, h, theta = tf.unstack(bboxes, axis=1)
bboxes_angle = tf.transpose(
tf.stack([x, y, w, h, angle_cls]))
refine_boxes_list.append(bboxes_angle)
center_point = bboxes_angle[:, :2] / stride
else:
center_point = bboxes[:, :2] / stride
refine_boxes_list.append(bboxes)
refine_feature_pyramid[level] = self.refine_feature_op(
points=center_point,
feature_map=feature_pyramid[level],
name=level)
refine_box_pred_list, refine_cls_score_list, refine_cls_prob_list, refine_head_cls_list, refine_angle_cls_list = self.refine_net(
refine_feature_pyramid, 'refine_net{}'.format(stage))
refine_box_pred = tf.concat(refine_box_pred_list, axis=0)
refine_cls_score = tf.concat(refine_cls_score_list, axis=0)
# refine_cls_prob = tf.concat(refine_cls_prob_list, axis=0)
refine_boxes = tf.concat(refine_boxes_list, axis=0)
refine_head_cls = tf.concat(refine_head_cls_list, axis=0)
refine_angle_cls = tf.concat(refine_angle_cls_list, axis=0)
if self.is_training:
with tf.variable_scope('build_refine_loss{}'.format(stage)):
refine_labels, refine_target_delta, refine_box_states, refine_target_boxes, refine_target_head_quadrant, refine_target_smooth_label = tf.py_func(
func=refinebox_target_layer,
inp=[
gtboxes_batch_r, gthead_quadrant, gt_smooth_label,
refine_boxes, pos_threshold, neg_threshold, gpu_id
],
Tout=[
tf.float32, tf.float32, tf.float32, tf.float32,
tf.float32, tf.float32
])
if cfgs.ANGLE_RANGE == 180:
refine_boxes_ = tf.py_func(coordinate_present_convert,
inp=[refine_boxes, 1],
Tout=[tf.float32])
refine_boxes_ = tf.reshape(refine_boxes_, [-1, 5])
self.add_anchor_img_smry(input_img_batch, refine_boxes_,
refine_box_states, 1)
else:
self.add_anchor_img_smry(input_img_batch, refine_boxes,
refine_box_states, 1)
refine_cls_loss = losses.focal_loss(refine_labels,
refine_cls_score,
refine_box_states)
if cfgs.USE_IOU_FACTOR:
refine_reg_loss = losses.iou_smooth_l1_loss_(
refine_target_delta,
refine_box_pred,
refine_box_states,
refine_target_boxes,
refine_boxes,
is_refine=True)
# refine_reg_loss = losses.iou_smooth_l1_loss_1(refine_box_pred,
# refine_box_states, refine_target_boxes,
# refine_boxes, is_refine=True)
else:
refine_reg_loss = losses.smooth_l1_loss(
refine_target_delta, refine_box_pred,
refine_box_states)
if cfgs.DATASET_NAME.startswith('DOTA'):
head_cls_loss = losses.head_specific_cls_focal_loss(
refine_target_head_quadrant,
refine_head_cls,
refine_box_states,
refine_labels,
specific_cls=[6, 7, 8, 9, 10, 11])
else:
head_cls_loss = losses.head_focal_loss(
refine_target_head_quadrant, refine_head_cls,
refine_box_states)
angle_cls_loss = losses.angle_focal_loss(
refine_target_smooth_label, refine_angle_cls,
refine_box_states)
self.losses_dict['refine_cls_loss{}'.format(
stage)] = refine_cls_loss * cfgs.CLS_WEIGHT
self.losses_dict['refine_reg_loss{}'.format(
stage)] = refine_reg_loss * cfgs.REG_WEIGHT
self.losses_dict['head_cls_loss{}'.format(
stage)] = head_cls_loss * cfgs.HEAD_CLS_WEIGHT
self.losses_dict['angle_cls_loss{}'.format(
stage)] = angle_cls_loss * cfgs.ANGLE_CLS_WEIGHT
return refine_box_pred_list, refine_cls_prob_list, refine_boxes_list, refine_head_cls_list, refine_angle_cls_list
def __init__(self, config):
"""Constructs a new RNN.
Args:
config: The configuration parameters
unique_name: Define the unique name of this lstm
num_input: The number of input units per step.
num_output: The number of output units per step.
num_hidden: The number of units in the hidden layer.
num_cells: The number of cells per layer
num_layers: Define number of time-step unfolds.
clip_norm: The norm, to which a gradient should be clipped
batch_size: This represents the batch size used for training.
minimizer: Select the appropriate minimizer
seed: Represents the seed for this model
momentum: The momentum if the minimizer is momentum
lr_rate: The initial learning rate
lr_decay_steps: The steps until a decay should happen
lr_decay_rate: How much should the learning rate be reduced
"""
# Save configuration and call the base class
self.config = config
self.name = config['unique_name']
# create a new session for running the model
# the session is not visible to the callee
self.sess = tf.Session()
# use the name of the model as a first variable scope
with tf.variable_scope(config['unique_name']):
# ------------------------ INITIALIZATION ----------------------------
# create initializers and use xavier initialization for the weights
# and use a bias of zero
self.bias_initializer = tf.constant_initializer(0.0)
self.weights_initializer =\
tf.contrib.layers.variance_scaling_initializer(1.0, 'FAN_AVG', True, config['seed'])
# just a placeholder indicating whether this is training time or not
self.training_time = tf.placeholder(tf.bool, None, name="training_time")
# create preprocess and postprocess network. Both will be
# modeled as a highway network
self.pre_highway_network = self.get_preprocess_network()
self.post_highway_network = self.get_postprocess_network()
# initialize all cells
self.cells = self.__init_all_cells()
# ----------------------- VARIABLES & PLACEHOLDER ---------------------------
self.global_step = tf.Variable(0, trainable=False, name='global_step')
# X and Y Tensor
self.x = tf.placeholder(tf.float32, [config['num_input'],
config['rec_num_layers'] + config['rec_num_layers_teacher_forcing'],
None], name="input")
self.y = tf.placeholder(tf.float32, [config['num_output'],
config['rec_num_layers_student_forcing'] + config['rec_num_layers_teacher_forcing'] + 1,
None], name="target")
# --------------------------------- GRAPH ------------------------------------
# define the memory state
self.h = [tf.tile(cell.get_hidden_state(), [1, tf.shape(self.x)[2]]) for cell in self.cells]
normalized_x = self.x + tf.random_normal(tf.shape(self.x), 0.0, 0.01)
to_use_x = tf.cond(self.training_time, lambda: tf.identity(normalized_x), lambda: tf.identity(self.x)) \
if config['add_variance'] else self.x
# unstack the input to a list, so it can be easier processed
unstacked_x = tf.unstack(to_use_x, axis=1)
# create all 3 components of the network, from preprocess, recurrent and
# postprocess parts of the network.
processed_unstacked_x = self.get_input_to_hidden_network(unstacked_x)
lst_h = self.get_hidden_to_hidden_network(config, processed_unstacked_x, self.h)
cutted_lst_h = lst_h[-(config['rec_num_layers_teacher_forcing'] + 1):]
# create the outputs for each element in the list
lst_output = self.get_hidden_to_output_network(cutted_lst_h)
# apply some student forcing
for self_l in range(config['rec_num_layers_student_forcing']):
added_model = lst_output[-1] + (0 if not config['distance_model'] else unstacked_x[-1])
unstacked_x.append(added_model)
processed_self_x_in = self.get_input_to_hidden_network([added_model])
h = self.get_hidden_to_hidden_network(config, processed_self_x_in, cutted_lst_h[-1])
lst_output.append(self.get_hidden_to_output_network(h)[0])
# define the target y
self.target_y = tf.stack(lst_output, axis=1, name="target_y")
if config['distance_model']:
self.target_y = tf.cumsum(self.target_y, axis=1) + tf.expand_dims(unstacked_x[-1], axis=1)
# first of create the reduced squared error
err = self.target_y - self.y
squared_err = tf.pow(err, 2)
# So far we have got the model
self.error = 0.5 * tf.reduce_mean(tf.reduce_sum(squared_err, axis=[0, 1]))
self.single_absolute_error = tf.reduce_sum(tf.reduce_mean(tf.abs(err), axis=1), axis=1)
# create minimizer
self.learning_rate = tf.train.exponential_decay(
self.config['lr_rate'],
self.global_step,
self.config['lr_decay_steps'],
self.config['lr_decay_rate'],
staircase=False)
# create the minimizer
self.minimizer = self.create_minimizer(self.learning_rate, self.error, self.global_step)
# init the global variables initializer
tf.set_random_seed(self.config['seed'])
# init if not restored
init = tf.global_variables_initializer()
self.sess.run(init)
def get_cum_graph_size(node):
cum_graph_sizes = tf.cumsum(graph_sizes, exclusive=True)
indicator_if_smaller = tf.cast(node - cum_graph_sizes >= 0, tf.int32)
graph_id = tf.reduce_sum(indicator_if_smaller) - 1
return tf.cumsum(graph_sizes, exclusive=True)[graph_id]
def call(self, X):
num_examples = tf.shape(X)[0]
if self.add_time:
time = tf.tile(
tf.range(tf.cast(tf.shape(X)[1], X.dtype),
dtype=X.dtype)[None, :, None], [num_examples, 1, 1])
time *= 2. / (tf.cast(tf.shape(X)[1], X.dtype) - 1.)
time -= 1.
X = tf.concat((time, X), axis=-1)
M = tf.matmul(tf.reshape(X, [-1, self.num_features]),
tf.reshape(self.kernel, [self.num_features, -1]))
M = tf.reshape(M,
[-1, self.len_examples, self.len_tensors, self.units])
# do final differencing
if self.difference:
M = tf.concat((tf.zeros_like(M[:, :1]), M[:, 1:] - M[:, :-1]),
axis=1)
if self.return_sequences:
Y = [tf.cumsum(M[..., 0, :], reverse=self.reverse, axis=1)]
else:
Y = [tf.reduce_sum(M[..., 0, :], axis=1)]
if not self.recursive_tensors:
k = 1
for m in range(1, self.num_levels):
R = np.asarray([M[..., k, :]])
k += 1
for i in range(1, m + 1):
d = min(i + 1, self.order)
R_next = np.empty((d), dtype=tf.Tensor)
R_next[0] = M[..., k, :] * tf.cumsum(tf.add_n(R.tolist()),
reverse=self.reverse,
exclusive=True,
axis=1)
for j in range(1, d):
R_next[j] = 1 / tf.cast(
j + 1, dtype=X.dtype) * M[..., k, :] * R[j - 1]
k += 1
R = R_next
if self.return_sequences:
Y.append(
tf.cumsum(tf.add_n(R.tolist()),
reverse=self.reverse,
axis=1))
else:
Y.append(tf.reduce_sum(tf.add_n(R.tolist()), axis=1))
else:
R = np.asarray([M[..., 0, :]])
for m in range(1, self.num_levels):
d = min(m + 1, self.order)
R_next = np.empty((d), dtype=tf.Tensor)
R_next[0] = M[..., m, :] * tf.cumsum(tf.add_n(R.tolist()),
exclusive=True,
reverse=self.reverse,
axis=1)
for j in range(1, d):
R_next[j] = 1 / tf.cast(
j + 1, dtype=X.dtype) * M[..., m, :] * R[j - 1]
R = R_next
if self.return_sequences:
Y.append(
tf.cumsum(tf.add_n(R.tolist()),
reverse=self.reverse,
axis=1))
else:
Y.append(tf.reduce_sum(tf.add_n(R.tolist()), axis=1))
if self.return_levels:
return tf.stack(Y, axis=-2)
else:
return tf.add_n(Y)
def EffectiveSampleSize(states,
filter_beyond_lag=300,
filter_threshold=0.05,
center=True,
normalize=True):
"""ESS computation for one single Tensor argument."""
def _axis_size(x, axis=None):
"""Get number of elements of `x` in `axis`, as type `x.dtype`."""
if axis is None:
return tf.cast(tf.size(x), x.dtype)
return tf.cast(tf.reduce_prod(tf.gather(tf.shape(x), axis)), x.dtype)
with tf.name_scope("effective_sample_size_single_state",
values=[states, filter_beyond_lag, filter_threshold]):
states = tf.convert_to_tensor(states, name="states")
dt = states.dtype
# filter_beyond_lag == None ==> auto_corr is the full sequence.
auto_corr = SanitizedAutoCorrelation(states,
axis=0,
center=center,
normalize=normalize,
max_lags=filter_beyond_lag)
auto_corr = tf.reduce_mean(auto_corr, 1)
if filter_threshold is not None:
filter_threshold = tf.convert_to_tensor(filter_threshold,
dtype=dt,
name="filter_threshold")
# Get a binary mask to zero out values of auto_corr below the threshold.
# mask[i, ...] = 1 if auto_corr[j, ...] > threshold for all j <= i,
# mask[i, ...] = 0, otherwise.
# So, along dimension zero, the mask will look like [1, 1, ..., 0, 0,...]
# Building step by step,
# Assume auto_corr = [1, 0.5, 0.0, 0.3], and filter_threshold = 0.2.
# Step 1: mask = [False, False, True, False]
mask = tf.abs(auto_corr) < filter_threshold
# Step 2: mask = [0, 0, 1, 1]
mask = tf.cast(mask, dtype=dt)
# Step 3: mask = [0, 0, 1, 2]
mask = tf.cumsum(mask, axis=0)
# Step 4: mask = [1, 1, 0, 0]
mask = tf.maximum(1. - mask, 0.)
auto_corr *= mask
# With R[k] := auto_corr[k, ...],
# ESS = N / {1 + 2 * Sum_{k=1}^N (N - k) / N * R[k]}
# = N / {-1 + 2 * Sum_{k=0}^N (N - k) / N * R[k]} (since R[0] = 1)
# approx N / {-1 + 2 * Sum_{k=0}^M (N - k) / N * R[k]}
# where M is the filter_beyond_lag truncation point chosen above.
# Get the factor (N - k) / N, and give it shape [M, 1,...,1], having total
# ndims the same as auto_corr
n = _axis_size(states, axis=0)
k = tf.range(0., _axis_size(auto_corr, axis=0))
nk_factor = (n - k) / n
if auto_corr.shape.ndims is not None:
new_shape = [-1] + [1] * (auto_corr.shape.ndims - 1)
else:
new_shape = tf.concat(
([-1], tf.ones([tf.rank(auto_corr) - 1], dtype=tf.int32)),
axis=0)
nk_factor = tf.reshape(nk_factor, new_shape)
#return tf.reduce_mean(n / (-1 + 2 * tf.reduce_sum(nk_factor * auto_corr, axis=0)), 0)
return n / (1.0 + 2 * tf.reduce_sum(
nk_factor[1:, Ellipsis] * auto_corr[1:, Ellipsis], axis=0))
def safe_cumprod(x, **kwargs):
"""Computes cumprod in logspace using cumsum to avoid underflow."""
return tf.exp(tf.cumsum(tf.log(tf.clip_by_value(x, 1e-10, 1)), **kwargs))
def build(self, for_deploy, variants=""):
conf = self.conf
name = self.name
job_type = self.job_type
dtype = self.dtype
self.beam_size = 1 if (not for_deploy or variants == "score") else sum(
self.conf.beam_splits)
graphlg.info("Creating placeholders...")
self.enc_str_inps = tf.placeholder(tf.string,
shape=(None, conf.input_max_len),
name="enc_inps")
self.enc_lens = tf.placeholder(tf.int32, shape=[None], name="enc_lens")
self.dec_str_inps = tf.placeholder(
tf.string, shape=[None, conf.output_max_len + 2], name="dec_inps")
self.dec_lens = tf.placeholder(tf.int32, shape=[None], name="dec_lens")
self.down_wgts = tf.placeholder(tf.float32,
shape=[None],
name="down_wgts")
with tf.name_scope("TableLookup"):
# lookup tables
self.in_table = lookup.MutableHashTable(key_dtype=tf.string,
value_dtype=tf.int64,
default_value=UNK_ID,
shared_name="in_table",
name="in_table",
checkpoint=True)
self.out_table = lookup.MutableHashTable(key_dtype=tf.int64,
value_dtype=tf.string,
default_value="_UNK",
shared_name="out_table",
name="out_table",
checkpoint=True)
self.enc_inps = self.in_table.lookup(self.enc_str_inps)
self.dec_inps = self.in_table.lookup(self.dec_str_inps)
# Create encode graph and get attn states
graphlg.info("Creating embeddings and embedding enc_inps.")
with ops.device("/cpu:0"):
self.embedding = variable_scope.get_variable(
"embedding", [conf.output_vocab_size, conf.embedding_size])
with tf.name_scope("Embed") as scope:
dec_inps = tf.slice(self.dec_inps, [0, 0],
[-1, conf.output_max_len + 1])
with ops.device("/cpu:0"):
self.emb_inps = embedding_lookup_unique(
self.embedding, self.enc_inps)
emb_dec_inps = embedding_lookup_unique(self.embedding,
dec_inps)
# output projector (w, b)
with tf.variable_scope("OutProj"):
if conf.out_layer_size:
w = tf.get_variable(
"proj_w", [conf.out_layer_size, conf.output_vocab_size],
dtype=dtype)
elif conf.bidirectional:
w = tf.get_variable(
"proj_w", [conf.num_units * 2, conf.output_vocab_size],
dtype=dtype)
else:
w = tf.get_variable("proj_w",
[conf.num_units, conf.output_vocab_size],
dtype=dtype)
b = tf.get_variable("proj_b", [conf.output_vocab_size],
dtype=dtype)
graphlg.info("Creating dynamic rnn...")
self.enc_outs, self.enc_states, mem_size, enc_state_size = DynRNN(
conf.cell_model,
conf.num_units,
conf.num_layers,
self.emb_inps,
self.enc_lens,
keep_prob=1.0,
bidi=conf.bidirectional,
name_scope="DynRNNEncoder")
batch_size = tf.shape(self.enc_outs)[0]
# Do vae on the state of the last layer of the encoder
final_enc_states = []
KLDs = 0.0
for each in self.enc_states:
z, KLD, l2 = CreateVAE([each],
self.conf.enc_latent_dim,
name_scope="VAE")
if isinstance(each, LSTMStateTuple):
final_enc_states.append(
LSTMStateTuple(each.c, tf.concat([each.h, z], 1)))
else:
final_enc_state.append(tf.concat([z, each], 1))
KLDs += KLD / self.conf.num_layers
with tf.name_scope("DynRNNDecode") as scope:
with tf.name_scope("ShapeToBeam") as scope:
beam_memory = tf.reshape(
tf.tile(self.enc_outs, [1, 1, self.beam_size]),
[-1, conf.input_max_len, mem_size])
beam_memory_lens = tf.squeeze(
tf.reshape(
tf.tile(tf.expand_dims(self.enc_lens, 1),
[1, self.beam_size]), [-1, 1]), 1)
def _to_beam(t):
return tf.reshape(tf.tile(t, [1, self.beam_size]),
[-1, int(t.get_shape()[1])])
beam_init_states = tf.contrib.framework.nest.map_structure(
_to_beam, final_enc_states)
max_mem_size = self.conf.input_max_len + self.conf.output_max_len + 2
cell = AttnCell(cell_model=conf.cell_model,
num_units=mem_size,
num_layers=conf.num_layers,
attn_type=self.conf.attention,
memory=beam_memory,
mem_lens=beam_memory_lens,
max_mem_size=max_mem_size,
addmem=self.conf.addmem,
keep_prob=conf.keep_prob,
dtype=tf.float32,
name_scope="AttnCell")
dec_init_state = DecStateInit(all_enc_states=beam_init_states,
decoder_cell=cell,
batch_size=batch_size *
self.beam_size,
init_type="each2each")
if not for_deploy:
hp_train = helper.ScheduledEmbeddingTrainingHelper(
inputs=emb_dec_inps,
sequence_length=self.dec_lens,
embedding=self.embedding,
sampling_probability=self.conf.sample_prob,
out_proj=(w, b))
output_layer = layers_core.Dense(
self.conf.out_layer_size,
use_bias=True) if self.conf.out_layer_size else None
my_decoder = basic_decoder.BasicDecoder(
cell=cell,
helper=hp_train,
initial_state=dec_init_state,
output_layer=output_layer)
cell_outs, final_state = decoder.dynamic_decode(
decoder=my_decoder,
impute_finished=False,
maximum_iterations=conf.output_max_len + 1,
scope=scope)
elif variants == "score":
dec_init_state = zero_attn_states
hp_train = helper.ScheduledEmbeddingTrainingHelper(
inputs=emb_dec_inps,
sequence_length=self.dec_lens,
embedding=self.embedding,
sampling_probability=0.0,
out_proj=(w, b))
output_layer = layers_core.Dense(
self.conf.out_layer_size,
use_bias=True) if self.conf.out_layer_size else None
my_decoder = score_decoder.ScoreDecoder(
cell=cell,
helper=hp_train,
out_proj=(w, b),
initial_state=dec_init_state,
output_layer=output_layer)
cell_outs, final_state = decoder.dynamic_decode(
decoder=my_decoder,
scope=scope,
maximum_iterations=self.conf.output_max_len,
impute_finished=False)
else:
hp_infer = helper.GreedyEmbeddingHelper(
embedding=self.embedding,
start_tokens=tf.ones(shape=[batch_size * self.beam_size],
dtype=tf.int32),
end_token=EOS_ID,
out_proj=(w, b))
output_layer = layers_core.Dense(
self.conf.out_layer_size,
use_bias=True) if self.conf.out_layer_size else None
my_decoder = beam_decoder.BeamDecoder(
cell=cell,
helper=hp_infer,
out_proj=(w, b),
initial_state=dec_init_state,
beam_splits=self.conf.beam_splits,
max_res_num=self.conf.max_res_num,
output_layer=output_layer)
cell_outs, final_state = decoder.dynamic_decode(
decoder=my_decoder,
scope=scope,
maximum_iterations=self.conf.output_max_len,
impute_finished=True)
if not for_deploy:
outputs = cell_outs.rnn_output
# Output ouputprojected to logits
L = tf.shape(outputs)[1]
outputs = tf.reshape(outputs, [-1, int(w.shape[0])])
outputs = tf.matmul(outputs, w) + b
logits = tf.reshape(outputs, [-1, L, int(w.shape[1])])
# branch 1 for debugging, doesn't have to be called
with tf.name_scope("DebugOutputs") as scope:
self.outputs = tf.argmax(logits, axis=2)
self.outputs = tf.reshape(self.outputs, [-1, L])
self.outputs = self.out_table.lookup(
tf.cast(self.outputs, tf.int64))
with tf.name_scope("Loss") as scope:
tars = tf.slice(self.dec_inps, [0, 1], [-1, L])
wgts = tf.cumsum(tf.one_hot(self.dec_lens, L),
axis=1,
reverse=True)
#wgts = wgts * tf.expand_dims(self.down_wgts, 1)
self.loss = loss.sequence_loss(logits=logits,
targets=tars,
weights=wgts,
average_across_timesteps=False,
average_across_batch=False)
example_losses = tf.reduce_sum(self.loss, 1)
batch_wgt = tf.reduce_sum(self.down_wgts)
see_KLD = tf.reduce_sum(KLDs * self.down_wgts) / batch_wgt
see_loss = tf.reduce_sum(example_losses / tf.cast(
self.dec_lens, tf.float32) * self.down_wgts) / batch_wgt
# not average over length
self.loss = tf.reduce_sum(
(example_losses + self.conf.kld_ratio * KLDs) *
self.down_wgts) / batch_wgt
with tf.name_scope(self.model_kind):
tf.summary.scalar("loss", see_loss)
tf.summary.scalar("kld", see_KLD)
graph_nodes = {
"loss": self.loss,
"inputs": {},
"outputs": {},
"debug_outputs": self.outputs
}
elif variants == "score":
L = tf.shape(cell_outs.logprobs)[1]
one_hot = tf.one_hot(tf.slice(self.dec_inps, [0, 1], [-1, L]),
depth=self.conf.output_vocab_size,
axis=-1,
on_value=1.0,
off_value=0.0)
outputs = tf.reduce_sum(cell_outs.logprobs * one_hot, 2)
outputs = tf.reduce_sum(outputs, axis=1)
inputs = {
"enc_inps:0": self.enc_str_inps,
"enc_lens:0": self.enc_lens,
"dec_inps:0": self.dec_str_inps,
"dec_lens:0": self.dec_lens
}
graph_nodes = {
"loss": None,
"inputs": inputs,
"outputs": {
"logprobs": outputs
},
"visualize": None
}
else:
L = tf.shape(cell_outs.beam_ends)[1]
beam_symbols = cell_outs.beam_symbols
beam_parents = cell_outs.beam_parents
beam_ends = cell_outs.beam_ends
beam_end_parents = cell_outs.beam_end_parents
beam_end_probs = cell_outs.beam_end_probs
alignments = cell_outs.alignments
beam_ends = tf.reshape(tf.transpose(beam_ends, [0, 2, 1]), [-1, L])
beam_end_parents = tf.reshape(
tf.transpose(beam_end_parents, [0, 2, 1]), [-1, L])
beam_end_probs = tf.reshape(
tf.transpose(beam_end_probs, [0, 2, 1]), [-1, L])
## Creating tail_ids
batch_size = tf.Print(batch_size, [batch_size],
message="VAERNN2 batch")
batch_offset = tf.expand_dims(
tf.cumsum(
tf.ones([batch_size, self.beam_size], dtype=tf.int32) *
self.beam_size,
axis=0,
exclusive=True), 2)
offset2 = tf.expand_dims(
tf.cumsum(
tf.ones([batch_size, self.beam_size * 2], dtype=tf.int32) *
self.beam_size,
axis=0,
exclusive=True), 2)
out_len = tf.shape(beam_symbols)[1]
self.beam_symbol_strs = tf.reshape(
self.out_table.lookup(tf.cast(beam_symbols, tf.int64)),
[batch_size, self.beam_size, -1])
self.beam_parents = tf.reshape(
beam_parents, [batch_size, self.beam_size, -1]) - batch_offset
self.beam_ends = tf.reshape(beam_ends,
[batch_size, self.beam_size * 2, -1])
self.beam_end_parents = tf.reshape(
beam_end_parents,
[batch_size, self.beam_size * 2, -1]) - offset2
self.beam_end_probs = tf.reshape(
beam_end_probs, [batch_size, self.beam_size * 2, -1])
self.beam_attns = tf.reshape(
alignments, [batch_size, self.beam_size, out_len, -1])
inputs = {
"enc_inps:0": self.enc_str_inps,
"enc_lens:0": self.enc_lens
}
outputs = {
"beam_symbols": self.beam_symbol_strs,
"beam_parents": self.beam_parents,
"beam_ends": self.beam_ends,
"beam_end_parents": self.beam_end_parents,
"beam_end_probs": self.beam_end_probs,
"beam_attns": self.beam_attns
}
graph_nodes = {
"loss": None,
"inputs": inputs,
"outputs": outputs,
"visualize": {
"z": z
}
}
return graph_nodes
def monotonic_attention(p_choose_i, previous_attention, mode):
# p_choose_i: (batch_size, encoder_seq_length), 각각의 원손는 sigmoid를 취한 값이기 때문에 0~1의 값을 가진다.
"""Compute monotonic attention distribution from choosing probabilities.
Monotonic attention implies that the input sequence is processed in an
explicitly left-to-right manner when generating the output sequence. In
addition, once an input sequence element is attended to at a given output
timestep, elements occurring before it cannot be attended to at subsequent
output timesteps. This function generates attention distributions according
to these assumptions. For more information, see ``Online and Linear-Time
Attention by Enforcing Monotonic Alignments''.
Args:
p_choose_i: Probability of choosing input sequence/memory element i. Should
be of shape (batch_size, input_sequence_length), and should all be in the
range [0, 1].
previous_attention: The attention distribution from the previous output
timestep. Should be of shape (batch_size, input_sequence_length). For
the first output timestep, preevious_attention[n] should be [1, 0, 0, ...,
0] for all n in [0, ... batch_size - 1].
mode: How to compute the attention distribution. Must be one of
'recursive', 'parallel', or 'hard'.
* 'recursive' uses tf.scan to recursively compute the distribution.
This is slowest but is exact, general, and does not suffer from
numerical instabilities.
* 'parallel' uses parallelized cumulative-sum and cumulative-product
operations to compute a closed-form solution to the recurrence
relation defining the attention distribution. This makes it more
efficient than 'recursive', but it requires numerical checks which
make the distribution non-exact. This can be a problem in particular
when input_sequence_length is long and/or p_choose_i has entries very
close to 0 or 1.
* 'hard' requires that the probabilities in p_choose_i are all either 0
or 1, and subsequently uses a more efficient and exact solution.
Returns:
A tensor of shape (batch_size, input_sequence_length) representing the
attention distributions for each sequence in the batch.
Raises:
ValueError: mode is not one of 'recursive', 'parallel', 'hard'.
"""
if mode == "recursive":
batch_size = tf.shape(p_choose_i)[0]
# Compute [1, 1 - p_choose_i[0], 1 - p_choose_i[1], ..., 1 - p_choose_i[-2]]
shifted_1mp_choose_i = tf.concat( [tf.ones((batch_size, 1)), 1 - p_choose_i[:, :-1]], 1)
# Compute attention distribution recursively as
# q[i] = (1 - p_choose_i[i])*q[i - 1] + previous_attention[i]
# attention[i] = p_choose_i[i]*q[i]
attention = p_choose_i*tf.transpose(tf.scan(
# Need to use reshape to remind TF of the shape between loop iterations
lambda x, yz: tf.reshape(yz[0]*x + yz[1], (batch_size,)),
# Loop variables yz[0] and yz[1]
[tf.transpose(shifted_1mp_choose_i), tf.transpose(previous_attention)],
# Initial value of x is just zeros
tf.zeros((batch_size,))))
elif mode == "parallel":
# safe_cumprod computes cumprod in logspace with numeric checks
cumprod_1mp_choose_i = safe_cumprod(1 - p_choose_i, axis=1, exclusive=True)
# Compute recurrence relation solution
attention = p_choose_i*cumprod_1mp_choose_i*tf.cumsum(
previous_attention /
# Clip cumprod_1mp to avoid divide-by-zero
tf.clip_by_value(cumprod_1mp_choose_i, 1e-10, 1.), axis=1)
elif mode == "hard":
# Remove any probabilities before the index chosen last time step
p_choose_i *= tf.cumsum(previous_attention, axis=1)
# Now, use exclusive cumprod to remove probabilities after the first
# chosen index, like so:
# p_choose_i = [0, 0, 0, 1, 1, 0, 1, 1]
# cumprod(1 - p_choose_i, exclusive=True) = [1, 1, 1, 1, 0, 0, 0, 0]
# Product of above: [0, 0, 0, 1, 0, 0, 0, 0]
attention = p_choose_i*tf.cumprod(1 - p_choose_i, axis=1, exclusive=True)
else:
raise ValueError("mode must be 'recursive', 'parallel', or 'hard'.")
return attention
def __init__(
self,
num_symbols,
num_qwords, #modify
num_embed_units,
num_units,
num_layers,
is_train,
vocab=None,
embed=None,
question_data=True,
learning_rate=0.5,
learning_rate_decay_factor=0.95,
max_gradient_norm=5.0,
num_samples=512,
max_length=30,
use_lstm=False,
use_bidrnn=False):
self.posts = tf.placeholder(tf.string, shape=(None, None)) # batch*len
self.posts_length = tf.placeholder(tf.int32, shape=(None)) # batch
self.responses = tf.placeholder(tf.string,
shape=(None, None)) # batch*len
self.responses_length = tf.placeholder(tf.int32, shape=(None)) # batch
self.keyword_tensor = tf.placeholder(
tf.float32,
shape=(None, 3,
None)) #(batch * len) * 3 * numsymbol, not used in STD
self.word_type = tf.placeholder(tf.int32, shape=(None)) #(batch * len)
# build the vocab table (string to index)
if is_train:
self.symbols = tf.Variable(vocab, trainable=False, name="symbols")
else:
self.symbols = tf.Variable(np.array(['.'] * num_symbols),
name="symbols")
self.symbol2index = HashTable(KeyValueTensorInitializer(
self.symbols,
tf.Variable(
np.array([i for i in range(num_symbols)], dtype=np.int32),
False)),
default_value=UNK_ID,
name="symbol2index")
#string2index for post and response
self.posts_input = self.symbol2index.lookup(self.posts) # batch*len
self.responses_target = self.symbol2index.lookup(
self.responses) #batch*len
batch_size, decoder_len = tf.shape(self.responses)[0], tf.shape(
self.responses)[1]
self.responses_input = tf.concat([
tf.ones([batch_size, 1], dtype=tf.int32) * GO_ID,
tf.split(self.responses_target, [decoder_len - 1, 1], 1)[0]
], 1) # batch*len
#delete the last column of responses_target) and add 'GO at the front of it.
self.decoder_mask = tf.reshape(
tf.cumsum(tf.one_hot(self.responses_length - 1, decoder_len),
reverse=True,
axis=1), [-1, decoder_len]) #bacth * len
print "embedding..."
# build the embedding table (index to vector)
if embed is None:
# initialize the embedding randomly
self.embed = tf.get_variable('embed',
[num_symbols, num_embed_units],
tf.float32)
else:
# initialize the embedding by pre-trained word vectors
self.embed = tf.get_variable('embed',
dtype=tf.float32,
initializer=embed)
#self.embed = tf.Print(self.embed, ['embed', self.embed])
self.encoder_input = tf.nn.embedding_lookup(
self.embed, self.posts_input) #batch*len*unit
self.decoder_input = tf.nn.embedding_lookup(self.embed,
self.responses_input)
print "embedding finished"
if use_lstm:
cell = MultiRNNCell([LSTMCell(num_units)] * num_layers)
else:
cell = MultiRNNCell([GRUCell(num_units)] * num_layers)
#for bidirectional rnn, not used in STD in final experiment
if use_bidrnn:
if use_lstm:
encoder_cell = LSTMCell
else:
encoder_cell = GRUCell
# rnn encoder
encoder_output, encoder_state = multi_bidirectional_rnn(
encoder_cell, num_units / 2, num_layers, self.encoder_input,
self.posts_length)
else:
# rnn encoder
encoder_output, encoder_state = dynamic_rnn(cell,
self.encoder_input,
self.posts_length,
dtype=tf.float32,
scope="encoder")
# get output projection function
output_fn, sampled_sequence_loss = output_projection_layer(
num_units, num_symbols, num_qwords, num_samples, question_data)
print "encoder_output.shape:", encoder_output.get_shape()
# get attention function
attention_keys, attention_values, attention_score_fn, attention_construct_fn \
= attention_decoder_fn.prepare_attention(encoder_output, 'luong', num_units)
# get decoding loop function
decoder_fn_train = attention_decoder_fn.attention_decoder_fn_train(
encoder_state, attention_keys, attention_values,
attention_score_fn, attention_construct_fn)
decoder_fn_inference = attention_decoder_fn.attention_decoder_fn_inference(
output_fn, self.keyword_tensor, encoder_state, attention_keys,
attention_values, attention_score_fn, attention_construct_fn,
self.embed, GO_ID, EOS_ID, max_length, num_symbols)
if is_train:
# rnn decoder
self.decoder_output, _, _ = dynamic_rnn_decoder(
cell,
decoder_fn_train,
self.decoder_input,
self.responses_length,
scope="decoder")
# calculate the loss of decoder
self.decoder_loss, self.ppl_loss = sampled_sequence_loss(
self.decoder_output, self.responses_target, self.decoder_mask,
self.keyword_tensor, self.word_type)
# building graph finished and get all parameters
self.params = tf.trainable_variables()
for item in tf.trainable_variables():
print item.name, item.get_shape()
# initialize the training process
self.learning_rate = tf.Variable(float(learning_rate),
trainable=False,
dtype=tf.float32)
self.learning_rate_decay_op = self.learning_rate.assign(
self.learning_rate * learning_rate_decay_factor)
self.global_step = tf.Variable(0, trainable=False)
# calculate the gradient of parameters
opt = tf.train.GradientDescentOptimizer(self.learning_rate)
gradients = tf.gradients(self.decoder_loss, self.params)
clipped_gradients, self.gradient_norm = tf.clip_by_global_norm(
gradients, max_gradient_norm)
self.update = opt.apply_gradients(zip(clipped_gradients,
self.params),
global_step=self.global_step)
#self.train_op = tf.train.AdamOptimizer().minimize(self.decoder_loss, global_step=self.global_step)
else:
# rnn decoder
self.decoder_distribution, _, _ = dynamic_rnn_decoder(
cell, decoder_fn_inference, scope="decoder")
print("self.decoder_distribution.shape():",
self.decoder_distribution.get_shape())
self.decoder_distribution = tf.Print(self.decoder_distribution, [
"distribution.shape()",
tf.reduce_sum(self.decoder_distribution)
])
# generating the response
self.generation_index = tf.argmax(
tf.split(self.decoder_distribution, [2, num_symbols - 2],
2)[1], 2) + 2 # for removing UNK
self.generation = tf.nn.embedding_lookup(self.symbols,
self.generation_index)
self.params = tf.trainable_variables()
self.saver = tf.train.Saver(tf.global_variables(),
write_version=tf.train.SaverDef.V2,
max_to_keep=3,
pad_step_number=True,
keep_checkpoint_every_n_hours=1.0)
def coords_several_sequences():
end_coords = tf.cumsum(sequence_lengths)
start_coords = tf.concat([[0], end_coords[:-1]], axis=0)
coords = tf.stack([start_coords, end_coords], axis=1)
coords = tf.cast(coords, dtype=tf.int32)
return tf.map_fn(join_charcaters_fn, coords, dtype=tf.string)
def stochastic(self):
p = tf.cumsum(self.probability, axis=-1)
x = tf.argmax(p > tf.random.uniform((len(p), 1)), axis=-1)
return x
def init_evaluation_model(stabNet, sample_num):
outputs = collections.OrderedDict()
with tf.variable_scope('stabNet'):
STN = ProjectiveTransformer([stabNet.h, stabNet.w])
outputs = collections.OrderedDict()
stabNet.inputs['Iu'] = tf.placeholder(
'float32', [None, 1, stabNet.h, stabNet.w, stabNet.c],
name='input_U')
stabNet.inputs['U_t_1_seq'] = tf.placeholder(
'float32', [None, sample_num - 2, stabNet.h, stabNet.w, 2],
name='input_U_t_1_seq')
stabNet.inputs['S_t_1_seq'] = tf.placeholder(
'float32', [None, sample_num - 2, stabNet.h, stabNet.w, 2],
name='input_S_t_1_seq')
stabNet.inputs['B_t_1'] = tf.placeholder(
'float32', [None, stabNet.h, stabNet.w, 2], name='input_B_t_1')
stabNet.inputs['B_t_1_H'] = tf.placeholder(
'float32', [None, stabNet.h, stabNet.w, 2], name='input_B_t_1_H')
# find path for Iuu
outputs['Iuu'] = tf.concat([
tf.expand_dims(stabNet.inputs['IU'][:, -1, :, :, :], axis=1),
stabNet.inputs['Iu']
],
axis=1)
outputs['src_Iuu_seq_flat'] = stabNet.flatten_seq(
outputs['Iuu'][:, 1:, :, :, :]) # t
outputs['trg_Iuu_seq_flat'] = stabNet.flatten_seq(
outputs['Iuu'][:, :-1, :, :, :]) # t_1
outputs['Iuu_concat'] = tf.concat(
[outputs['src_Iuu_seq_flat'], outputs['trg_Iuu_seq_flat']],
axis=3) # t_1, t
sample_num_uu = 1
outputs['U_t_seq_flat_H'] = pathFinder(outputs['Iuu_concat'],
stabNet.F_dim,
False,
stabNet.get_reuse('pathFinder'),
scope='pathFinder')
outputs['U_t_seq_flat'] = STN.H2OF(
tf.ones_like(outputs['src_Iuu_seq_flat']),
outputs['U_t_seq_flat_H'])
outputs['U_t_seq'] = stabNet.unflatten_seq(outputs['U_t_seq_flat'],
sample_num_uu)
outputs['U_t'] = outputs['U_t_seq'][:, 0, :, :, :]
## 2. P_t_1
outputs['P_t_1_seq'] = tf.cumsum(stabNet.inputs['S_t_1_seq'], axis=1)
outputs['P_t_1'] = outputs['P_t_1_seq'][:, -1, :, :, :]
## 3. C_t_1
outputs['C_t_1_seq'] = tf.cumsum(stabNet.inputs['U_t_1_seq'], axis=1)
outputs['C_t_1'] = outputs['C_t_1_seq'][:, -1, :, :, :]
outputs['B_t_1_cumsum'] = outputs['P_t_1'] - outputs['C_t_1']
####################
## PATH SMOOTHING ##
####################
with tf.variable_scope('pathSmoother'):
outputs['U_t_seq_c'] = stabNet.seq_to_channel(
tf.concat([stabNet.inputs['U_t_1_seq'], outputs['U_t_seq']],
axis=1))
outputs['S_t_1_seq_c'] = stabNet.seq_to_channel(
stabNet.inputs['S_t_1_seq'])
outputs['S_t_pred_H'] = pathPredictor(
tf.concat([outputs['S_t_1_seq_c'], outputs['U_t_seq_c']],
axis=3),
stabNet.F_dim,
False,
stabNet.get_reuse('pathPredictor'),
scope='pathPredictor')
outputs['S_t_pred'] = STN.H2OF(
tf.ones_like(stabNet.inputs['Iu'][:, 0, :, :, :]),
outputs['S_t_pred_H'])
outputs['S_t_pred_seq'] = tf.expand_dims(outputs['S_t_pred'],
axis=1)
outputs['IUu_seq_c'] = stabNet.seq_to_channel(
tf.concat([
tf.expand_dims(stabNet.inputs['IU'][:, -1, :, :, :],
axis=1), stabNet.inputs['Iu']
],
axis=1))
outputs['B_t_pred_H'] = pathUpdater(
tf.concat([
tf.stop_gradient(
outputs['S_t_pred']), stabNet.inputs['B_t_1'],
outputs['U_t'], outputs['IUu_seq_c']
],
axis=3),
stabNet.F_dim,
False,
stabNet.get_reuse('pathUpdater'),
scope='pathRefiner')
outputs['B_t'] = STN.H2OF(
tf.ones_like(stabNet.inputs['Iu'][:, 0, :, :, :]),
outputs['B_t_pred_H'])
outputs['B_t_H'] = -1 * (outputs['S_t_pred'] - outputs['U_t'])
#############
## WARPING ##
#############
# B_t = S_t - U_t + B_t_1 = S_t - U_t + (P_t_1 - C_t_1) - C_0
outputs['B_t_cumsum'] = -1 * (outputs['S_t_pred'] - outputs['U_t'] +
outputs['B_t_1_cumsum'])
outputs['Iu'] = tf.reshape(stabNet.inputs['Iu'],
[-1, stabNet.h, stabNet.w, stabNet.c])
with tf.variable_scope('STN'):
outputs['Is_pred'] = tf_warp(outputs['Iu'], outputs['B_t'])
outputs['Is_pred_H'] = tf_warp(outputs['Iu'], outputs['B_t_H'])
outputs['Is_pred_cumsum'] = tf_warp(outputs['Iu'],
outputs['B_t_cumsum'])
return outputs
def __init__(self, is_training=True, clue_level=1):
self.graph = tf.Graph()
with self.graph.as_default():
if is_training:
self.x, self.y, self.xloc, self.yloc, self.m, self.num_batch = get_batch_data(
) # (N, T)
else: # inference
self.x = tf.placeholder(tf.int32, shape=(None, hp.x_maxlen))
self.y = tf.placeholder(tf.int32, shape=(None, hp.y_maxlen))
self.xloc = tf.placeholder(tf.int32, shape=(None, hp.x_maxlen))
self.yloc = tf.placeholder(tf.int32, shape=(None, hp.y_maxlen))
self.m = tf.placeholder(tf.int32, shape=(None, hp.x_maxlen))
self.clue_level = clue_level
# define decoder inputs
self.decoder_inputs = tf.concat(
(tf.ones_like(self.y[:, :1]) * 2, self.y[:, :-1]), -1) # 2:<S>
# Load vocabulary
src2idx, idx2src = load_src_vocab()
des2idx, idx2des = load_des_vocab()
self.hidden_units = hp.hidden_units
# Encoder
with tf.variable_scope("encoder"):
## Embedding
self.enc = embedding(self.x,
vocab_size=len(src2idx),
num_units=self.hidden_units,
scale=True,
scope="enc_embed")
if is_training:
self.clue_level = tf.random_poisson(shape=[1],
lam=1,
dtype=tf.int32)
#clue_level = tf.Print(clue_level, [clue_level])
#self.enc_mask = tf.expand_dims(tf.cast(tf.equal(self.m, 1), tf.float32), 2)
self.enc_mask = tf.expand_dims(
tf.cast(
tf.logical_and(tf.greater_equal(self.m, 1),
tf.less_equal(self.m, self.clue_level)),
tf.float32), 2)
self.enc = tf.concat([self.enc, self.enc_mask], axis=2)
self.hidden_units += 1
## Positional Encoding
if hp.sinusoid:
self.enc += positional_encoding(
self.x,
num_units=self.hidden_units,
zero_pad=False,
scale=False,
scope="enc_pe")
else:
self.enc += embedding(tf.tile(
tf.expand_dims(tf.range(tf.shape(self.x)[1]), 0),
[tf.shape(self.x)[0], 1]),
vocab_size=hp.x_maxlen,
num_units=self.hidden_units,
zero_pad=False,
scale=False,
scope="enc_pe")
tf.add_to_collection('explain_input', self.enc)
## Dropout
self.enc = tf.layers.dropout(
self.enc,
rate=hp.dropout_rate,
training=tf.convert_to_tensor(is_training))
## Blocks
for i in range(hp.num_blocks):
with tf.variable_scope("num_blocks_{}".format(i)):
### Multihead Attention
self.enc = multihead_attention(
queries=self.enc,
keys=self.enc,
num_units=self.hidden_units,
num_heads=hp.num_heads,
dropout_rate=hp.dropout_rate,
is_training=is_training,
causality=False)
### Feed Forward
self.enc = feedforward(self.enc,
num_units=[
4 * self.hidden_units,
self.hidden_units
])
# Decoder
with tf.variable_scope("decoder"):
## Embedding
self.dec = embedding(self.decoder_inputs,
vocab_size=len(des2idx),
num_units=self.hidden_units,
scale=True,
scope="dec_embed")
## Positional Encoding
if hp.sinusoid:
self.dec += positional_encoding(
self.decoder_inputs,
vocab_size=hp.y_maxlen,
num_units=self.hidden_units,
zero_pad=False,
scale=False,
scope="dec_pe")
else:
self.dec += embedding(tf.tile(
tf.expand_dims(
tf.range(tf.shape(self.decoder_inputs)[1]), 0),
[tf.shape(self.decoder_inputs)[0], 1]),
vocab_size=hp.y_maxlen,
num_units=self.hidden_units,
zero_pad=False,
scale=False,
scope="dec_pe")
tf.add_to_collection('explain_input', self.dec)
## Dropout
self.dec_word = self.dec = tf.layers.dropout(
self.dec,
rate=hp.dropout_rate,
training=tf.convert_to_tensor(is_training))
## Blocks
for i in range(hp.num_blocks):
with tf.variable_scope("num_blocks_{}".format(i)):
## Multihead Attention ( self-attention)
self.dec = multihead_attention(
queries=self.dec,
keys=self.dec_word,
num_units=self.hidden_units,
num_heads=hp.num_heads,
dropout_rate=hp.dropout_rate,
is_training=is_training,
causality=True,
scope="self_attention")
## Multihead Attention ( vanilla attention)
self.dec = multihead_attention(
queries=self.dec,
keys=self.enc,
num_units=self.hidden_units,
num_heads=hp.num_heads,
dropout_rate=hp.dropout_rate,
is_training=is_training,
causality=False,
scope="vanilla_attention")
## Feed Forward
with tf.variable_scope(
"num_blocks_fc_dec_{}".format(i)):
self.dec = feedforward(self.dec,
num_units=[
4 * self.hidden_units,
self.hidden_units
])
self.loc_enc = self.enc
self.loc_logits = attention_matrix(queries=self.loc_enc,
keys=self.dec,
num_units=self.hidden_units,
dropout_rate=hp.dropout_rate,
is_training=is_training,
causality=False,
scope="copy_matrix")
xloc_vec = tf.one_hot(self.xloc,
depth=hp.y_maxlen,
dtype=tf.float32)
yloc_vec = tf.one_hot(self.yloc,
depth=hp.y_maxlen,
dtype=tf.float32)
loc_label = tf.matmul(yloc_vec, tf.transpose(xloc_vec, [0, 2, 1]))
self.loc_label_history = tf.cumsum(loc_label,
axis=1,
exclusive=True)
# Final linear projection
self.loc_logits = tf.transpose(self.loc_logits, [0, 2, 1])
self.loc_logits = tf.stack(
[self.loc_logits, self.loc_label_history], axis=3)
self.loc_logits = tf.squeeze(tf.layers.dense(self.loc_logits, 1),
axis=[3])
x_masks = tf.tile(tf.expand_dims(tf.equal(self.x, 0), 1),
[1, hp.y_maxlen, 1])
#y_masks = tf.tile(tf.expand_dims(tf.equal(self.y, 0), -1), [1, 1, hp.x_maxlen])
paddings = tf.ones_like(self.loc_logits) * (-1e6)
self.loc_logits = tf.where(x_masks, paddings,
self.loc_logits) # (N, T_q, T_k)
#self.loc_logits = tf.where(y_masks, paddings, self.loc_logits) # (N, T_q, T_k)
self.logits = tf.layers.dense(self.dec, len(des2idx))
self.final_logits = tf.concat([self.logits, self.loc_logits],
axis=2)
tf.add_to_collection('explain_output', self.final_logits)
#self.final_logits = tf.Print(self.final_logits, [self.final_logits[0][0][-3:]], message="final_logits_last")
#self.final_logits = tf.Print(self.final_logits, [self.final_logits[0][0][:3]], message="final_logits_first")
self.preds = tf.to_int32(tf.argmax(self.final_logits, axis=-1))
self.istarget = tf.to_float(tf.not_equal(self.y, 0))
if is_training:
label = tf.one_hot(self.y,
depth=len(des2idx),
dtype=tf.float32)
# A special case, when copy is open, we should not need unk label
unk_pos = label[:, :, 1]
copy_pos = tf.sign(tf.reduce_sum(loc_label, axis=2))
fix_pos = unk_pos * copy_pos
#fix_pos = tf.Print(fix_pos, [tf.reduce_sum(unk_pos, axis=-1), tf.shape(unk_pos)], message="\nunk_pos", summarize=16)
#fix_pos = tf.Print(fix_pos, [tf.reduce_sum(fix_pos, axis=-1), tf.shape(fix_pos)], message="\nfix_pos", summarize=16)
fix_label = tf.expand_dims(label[:, :, 1] - fix_pos, axis=2)
label = tf.concat(
[label[:, :, :1], fix_label, label[:, :, 2:]], axis=-1)
self.final_label = tf.concat([label, loc_label], axis=2)
#self.final_label = tf.Print(self.final_label, [self.final_label[0][0][-3:]], message="final_label")
# Loss
self.min_logit_loc = min_logit_loc = tf.argmax(
self.final_logits + (-1e6) * (1.0 - self.final_label),
axis=-1)
#min_logit_loc = tf.Print(min_logit_loc, [min_logit_loc[0]], message="min_logit_loc")
self.min_label = tf.one_hot(min_logit_loc,
depth=len(des2idx) + hp.x_maxlen,
dtype=tf.float32)
vocab_count = len(des2idx) + hp.x_maxlen - tf.reduce_sum(
tf.cast(tf.equal(self.x, 0), dtype=tf.int32), axis=-1)
#vocab_count = tf.Print(vocab_count, [vocab_count[0]], message="vocab_count")
self.y_smoothed = label_smoothing_mask(self.min_label,
vocab_count)
#self.final_logits = tf.Print(self.final_logits, [self.final_logits[0][1][min_logit_loc[0][1]]], message="final_logits")
#self.y_smoothed = tf.Print(self.y_smoothed, [self.y_smoothed[0][1][min_logit_loc[0][1]]], message="y_smoothed")
self.loss = tf.nn.softmax_cross_entropy_with_logits_v2(
logits=self.final_logits, labels=self.y_smoothed)
#self.loss = tf.Print(self.loss, [self.final_label[0][1][min_logit_loc[0][1]]], message="final_label")
#self.loss = tf.Print(self.loss, [self.loss[0][-3:]], message="loss_last")
#self.loss = tf.Print(self.loss, [self.loss[0][:3]], message="loss_first")
self.mean_loss = tf.reduce_sum(
self.loss * self.istarget) / (tf.reduce_sum(self.istarget))
# Training Scheme
self.global_step = tf.Variable(0,
name='global_step',
trainable=False)
self.optimizer = tf.train.AdamOptimizer(learning_rate=hp.lr,
beta1=0.9,
beta2=0.98,
epsilon=1e-8)
self.train_op = self.optimizer.minimize(
self.mean_loss, global_step=self.global_step)
# Summary
tf.summary.scalar('mean_loss', self.mean_loss)
self.merged = tf.summary.merge_all()
def conditional_answer_layer(size, encoded_question, question_length, encoded_support, support_length,
correct_start, support2question, answer2support, is_eval, topk=1, max_span_size=10000,
bilinear=False):
question_state = compute_question_state(encoded_question, question_length)
question_state = tf.gather(question_state, support2question)
# Prediction
# start
if bilinear:
hidden_start = tf.layers.dense(question_state, size, name="hidden_start")
start_scores = tf.einsum('ik,ijk->ij', hidden_start, encoded_support)
else:
static_input = tf.concat([tf.expand_dims(question_state, 1) * encoded_support, encoded_support], 2)
hidden_start = tf.layers.dense(question_state, size, name="hidden_start_1")
hidden_start = tf.layers.dense(
static_input, size, use_bias=False, name="hidden_start_2") + tf.expand_dims(hidden_start, 1)
start_scores = tf.layers.dense(tf.nn.relu(hidden_start), 1, use_bias=False, name="start_scores")
start_scores = tf.squeeze(start_scores, [2])
support_mask = misc.mask_for_lengths(support_length)
start_scores = start_scores + support_mask
max_support_length = tf.shape(start_scores)[1]
_, _, num_doc_per_question = tf.unique_with_counts(support2question)
offsets = tf.cumsum(num_doc_per_question, exclusive=True)
doc_idx_for_support = tf.range(tf.shape(support2question)[0]) - tf.gather(offsets, support2question)
doc_idx, start_pointer = tf.cond(
is_eval,
lambda: segment_top_k(start_scores, support2question, topk)[:2],
lambda: (tf.expand_dims(answer2support, 1), tf.expand_dims(correct_start, 1)))
doc_idx_flat = tf.reshape(doc_idx, [-1])
start_pointer = tf.reshape(start_pointer, [-1])
start_state = tf.gather_nd(encoded_support, tf.stack([doc_idx_flat, start_pointer], 1))
start_state.set_shape([None, size])
encoded_support_gathered = tf.gather(encoded_support, doc_idx_flat)
question_state = tf.gather(question_state, doc_idx_flat)
if bilinear:
hidden_end = tf.layers.dense(tf.concat([question_state, start_state], 1), size, name="hidden_end")
end_scores = tf.einsum('ik,ijk->ij', hidden_end, encoded_support_gathered)
else:
end_input = tf.concat([tf.expand_dims(start_state, 1) * encoded_support_gathered,
tf.gather(static_input, doc_idx_flat)], 2)
hidden_end = tf.layers.dense(tf.concat([question_state, start_state], 1), size,
name="hidden_end_1")
hidden_end = tf.layers.dense(
end_input, size, use_bias=False, name="hidden_end_2") + tf.expand_dims(hidden_end, 1)
end_scores = tf.layers.dense(tf.nn.relu(hidden_end), 1, use_bias=False, name="end_scores")
end_scores = tf.squeeze(end_scores, [2])
end_scores = end_scores + tf.gather(support_mask, doc_idx_flat)
def train():
predicted_end_pointer = tf.argmax(end_scores, axis=1, output_type=tf.int32)
return start_scores, end_scores, doc_idx, start_pointer, predicted_end_pointer
def eval():
# [num_questions * topk, support_length]
left_mask = misc.mask_for_lengths(tf.cast(start_pointer, tf.int32),
max_support_length, mask_right=False)
right_mask = misc.mask_for_lengths(tf.cast(start_pointer + max_span_size, tf.int32),
max_support_length)
masked_end_scores = end_scores + left_mask + right_mask
predicted_ends = tf.argmax(masked_end_scores, axis=1, output_type=tf.int32)
return (start_scores, masked_end_scores,
tf.gather(doc_idx_for_support, doc_idx_flat), start_pointer, predicted_ends)
return tf.cond(is_eval, eval, train)
def call(self,
inputs: tf.Tensor,
states: Optional[States] = None,
output_states: bool = True
) -> Union[tf.Tensor, Tuple[tf.Tensor, States]]:
"""Calls the layer with the given inputs.
Args:
inputs: An input `tf.Tensor`.
states: A `dict` of states such that, if any of the keys match for this
layer, will overwrite the contents of the buffer(s).
output_states: A `bool`. If True, returns the output tensor and output
states. Returns just the output tensor otherwise.
Returns:
An output `tf.Tensor` (and optionally the states if `output_states=True`).
If `causal=True`, the output tensor will have shape
`[batch_size, num_frames, 1, 1, channels]` if `keepdims=True`. We keep
the frame dimension in this case to simulate a cumulative global average
as if we are inputting one frame at a time. If `causal=False`, the output
is equivalent to `tf.keras.layers.GlobalAveragePooling3D` with shape
`[batch_size, 1, 1, 1, channels]` if `keepdims=True` (plus the optional
buffer stored in `states`).
Raises:
ValueError: If using 'channels_first' data format.
"""
states = dict(states) if states is not None else {}
if tf.keras.backend.image_data_format() == 'channels_first':
raise ValueError('"channels_first" mode is unsupported.')
# Shape: [batch_size, 1, 1, 1, channels]
buffer = states.get(self._state_name, None)
if buffer is None:
buffer = tf.zeros_like(inputs[:, :1, :1, :1], dtype=inputs.dtype)
states[self._state_name] = buffer
# Keep a count of frames encountered across input iterations in
# num_frames to be able to accurately take a cumulative average across
# all frames when running in streaming mode
num_frames = tf.shape(inputs)[1]
frame_count = states.get(self._frame_count_name, 0)
states[self._frame_count_name] = frame_count + num_frames
if self._causal:
# Take a mean of spatial dimensions to make computation more efficient.
x = tf.reduce_mean(inputs, axis=[2, 3], keepdims=True)
x = tf.cumsum(x, axis=1)
x = x + buffer
# The last frame will be the value of the next state
# Shape: [batch_size, 1, 1, 1, channels]
states[self._state_name] = x[:, -1:]
# In causal mode, the divisor increments by 1 for every frame to
# calculate cumulative averages instead of one global average
mean_divisors = tf.range(num_frames) + frame_count + 1
mean_divisors = tf.reshape(mean_divisors, [1, num_frames, 1, 1, 1])
mean_divisors = tf.cast(mean_divisors, x.dtype)
# Shape: [batch_size, num_frames, 1, 1, channels]
x = x / mean_divisors
else:
# In non-causal mode, we (optionally) sum across frames to take a
# cumulative average across input iterations rather than individual
# frames. If no buffer state is passed, this essentially becomes
# regular global average pooling.
# Shape: [batch_size, 1, 1, 1, channels]
x = tf.reduce_sum(inputs, axis=(1, 2, 3), keepdims=True)
x = x / tf.cast(tf.shape(inputs)[2] * tf.shape(inputs)[3], x.dtype)
x = x + buffer
# Shape: [batch_size, 1, 1, 1, channels]
states[self._state_name] = x
x = x / tf.cast(frame_count + num_frames, x.dtype)
if not self._keepdims:
x = tf.squeeze(x, axis=(1, 2, 3))
return (x, states) if output_states else x
def make_ids_type_ids(input_ids, sep_id=102):
x = input_ids
x = tf.cast(x == tf.constant(sep_id), tf.int32)
x = tf.cast(tf.cumsum(x, axis=1, exclusive=True) % 2, tf.int32)
return x
def build_core_signals(self):
self._signals['mask'] = tf.placeholder(tf.float32,
shape=(cfg.T, None, 1),
name="_mask")
self._signals['done'] = tf.placeholder(tf.float32,
shape=(cfg.T, None, 1),
name="_done")
self._signals['all_obs'] = tf.placeholder(
tf.float32,
shape=(cfg.T + 1 if cfg.T is not None else None, None) +
self.obs_shape,
name="_all_obs")
# observations that we learn about
self._signals['obs'] = tf.identity(self._signals['all_obs'][:-1, ...],
name="_obs")
# observations that we use as targets
self._signals['target_obs'] = tf.identity(
self._signals['all_obs'][1:, ...], name="_target_obs")
self._signals['actions'] = tf.placeholder(tf.float32,
shape=(cfg.T, None) +
self.action_shape,
name="_actions")
self._signals['gamma'] = tf.constant(self.gamma)
self._signals['batch_size'] = tf.shape(self._signals['obs'])[1]
self._signals['batch_size_float'] = tf.cast(
self._signals['batch_size'], tf.float32)
self._signals['rewards'] = tf.placeholder(tf.float32,
shape=(cfg.T, None, 1),
name="_rewards")
self._signals['returns'] = tf.cumsum(self._signals['rewards'],
axis=0,
reverse=True,
name="_returns")
self._signals['reward_per_ep'] = tf.reduce_mean(tf.reduce_sum(
self._signals['rewards'], axis=0),
name="_reward_per_ep")
self.add_recorded_values(reward_per_ep=self._signals['reward_per_ep'])
self._signals['mode'] = tf.placeholder(tf.string, ())
self._signals['weights'] = tf.placeholder(tf.float32,
shape=(cfg.T, None, 1),
name="_weights")
T = tf.shape(self._signals['mask'])[0]
discount_matrix = tf_discount_matrix(self.gamma, T)
discounted_returns = tf.tensordot(discount_matrix,
self._signals['rewards'],
axes=1,
name="_discounted_returns")
self._signals['discounted_returns'] = discounted_returns
mean_returns = masked_mean(discounted_returns,
self._signals['mask'],
axis=1,
keepdims=True)
mean_returns += tf.zeros_like(discounted_returns)
self._signals['average_discounted_returns'] = mean_returns
# off-policy
self._signals['mu_utils'] = tf.placeholder(tf.float32,
shape=(
cfg.T,
None,
) + self.mu.param_shape,
name="_mu_log_probs")
self._signals['mu_exploration'] = tf.placeholder(
tf.float32, shape=(None, ), name="_mu_exploration")
self._signals['mu_log_probs'] = tf.placeholder(tf.float32,
shape=(cfg.T, None, 1),
name="_mu_log_probs")
for obj in self.rl_objects:
obj.build_core_signals(self)
def make_strs_type_ids(input_strs):
x = input_strs
x = tf.cast(x == tf.constant('[SEP]'), tf.int32)
x = tf.cast(tf.cumsum(x, axis=1, exclusive=True) % 2, tf.int32)
return x
def __init__(self,
lr,
batch_size,
dimension,
util_train,
util_test,
campaign,
reg_lambda,
nn=False):
# hyperparameters
self.lr = lr
self.batch_size = batch_size
self.util_train = util_train
self.util_test = util_test
self.reg_lambda = reg_lambda
self.train_data_amt = util_train.get_data_amt()
self.test_data_amt = util_test.get_data_amt()
# output dir
model_name = "{}_{}_{}".format(self.lr, self.reg_lambda,
self.batch_size)
if nn:
self.output_dir = "output/coxnn/{}/{}/".format(
campaign, model_name)
else:
self.output_dir = "output/cox/{}/{}/".format(campaign, model_name)
if not os.path.exists(self.output_dir):
os.makedirs(self.output_dir)
# reset graph
tf.reset_default_graph()
# placeholders, sorted value
self.X = tf.sparse_placeholder(tf.float64)
self.z = tf.placeholder(tf.float64)
self.b = tf.placeholder(tf.float64)
self.y = tf.placeholder(tf.float64)
# computation graph, linear estimator or neural network
if nn:
hidden_size = 20
self.w1 = tf.Variable(initial_value=tf.truncated_normal(
shape=[dimension, hidden_size], dtype=tf.float64),
name='w1')
self.w2 = tf.Variable(initial_value=tf.truncated_normal(
shape=[hidden_size, 1], dtype=tf.float64),
name='w2')
self.hidden_values = tf.nn.relu(
tf.sparse_tensor_dense_matmul(self.X, self.w1))
self.index = tf.matmul(self.hidden_values, self.w2)
self.reg = tf.nn.l2_loss(self.w1[1:, ]) + tf.nn.l2_loss(
self.w2[1:, ])
else:
self.w = tf.Variable(initial_value=tf.truncated_normal(
shape=[dimension, 1], dtype=tf.float64),
name='w')
self.index = tf.sparse_tensor_dense_matmul(self.X, self.w)
self.reg = tf.reduce_sum(tf.abs(self.w[1:, ]))
self.multiple_times = tf.exp(self.index)
self.loss = -tf.reduce_sum((self.index - tf.log(tf.clip_by_value(tf.cumsum(self.multiple_times, reverse=True), 1e-8, 1.0))) * self.y) + \
self.reg
self.optimizer = tf.train.GradientDescentOptimizer(self.lr)
self.train_step = self.optimizer.minimize(self.loss)
# for test h0
self.base = self.z * self.y + self.b * (1 - self.y)
self.candidate = (1 /
tf.cumsum(tf.exp(self.index), reverse=True)) * self.y
# session initialization
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
self.sess = tf.Session(config=config)
tf.global_variables_initializer().run(session=self.sess)
maxval=10,
dtype=tf.float64,
seed=[4321, 0]))
y = tf.math.sin(x * 3)
xnew = tf.cast(tf.linspace(-1.0, 11.0, 1001), tf.float64)
spline = geoml.interpolation.CubicSpline(x, y)
ynew = spline.interpolate(xnew)
ynew_d1 = spline.interpolate_d1(xnew)
plt.plot(xnew.numpy(), ynew.numpy(), "-r")
plt.plot(x.numpy(), y.numpy(), "ok")
plt.plot(xnew.numpy(), ynew_d1.numpy(), "-g")
plt.plot(x.numpy(), spline.d.numpy(), "og")
y_mono = tf.cumsum(tf.math.abs(y))
spline_mono = geoml.interpolation.MonotonicCubicSpline(x, y_mono)
ynew_mono = spline_mono.interpolate(xnew)
ynew_mono_d1 = spline_mono.interpolate_d1(xnew)
plt.plot(xnew.numpy(), ynew_mono.numpy(), "-r")
plt.plot(x.numpy(), y_mono.numpy(), "ok")
plt.plot(xnew.numpy(), ynew_mono_d1.numpy(), "-g")
plt.plot(x.numpy(), spline_mono.d.numpy(), "og")
plt.hlines(0, -1, 11, linestyles="dashed")
setup = """
import numpy as np
import tensorflow as tf
import geoml
