def __get_pool_set(self):
# Retrieves the pool set from the parsed Excel data stream.
self.add_debug("Obtain pool set ...")
handler = PoolCreationSetParserHandler(self.stream, parent=self)
self.__pool_set = handler.get_result()
parsed_num_designs = handler.get_number_designs()
if parsed_num_designs != self.number_designs:
msg = (
"The number of designs per molecule design pool in the "
"request file (%i) differs from the requested number of "
"designs (%i)." % (parsed_num_designs, self.number_designs)
)
self.add_error(msg)
agg = get_root_aggregate(IMoleculeType)
md_type = agg.get_by_id(self.molecule_type)
parsed_mol_type = handler.get_molecule_type()
if parsed_mol_type != md_type:
msg = (
"The molecule type of the pools in the request file (%s) "
"differs from the requested molecule type (%s)." % (parsed_mol_type, self.molecule_type)
)
self.add_error(msg)
if self.__pool_set is None:
msg = "Unable to parse library pool set!"
self.add_error(msg)
def __get_pool_set(self):
# Also sets the stock concentration.
self.add_debug('Obtain pool set ...')
handler = PoolCreationSetParserHandler(self.stream, parent=self)
self.__pool_set = handler.get_result()
if self.__pool_set is None:
msg = 'Unable to parse pool set!'
self.add_error(msg)
else:
self.__number_designs = handler.get_number_designs()
mt = handler.get_molecule_type()
# In theory we could check the default stock concentrations for
# all the single molecule designs. However, for this we would have
# to get the corresponding pools first. Since the handler already
# made sure that we have equal molecule types and also the number
# of designs (1) is always equal it is very unlikely to stumble
# across a different concentration. Even so, the optimizer would
# not find proper stock samples for these designs.
self.__stock_concentration = get_default_stock_concentration(mt)
def __get_pool_set(self):
# Also sets the stock concentration.
self.add_debug('Obtain pool set ...')
handler = PoolCreationSetParserHandler(self.stream, parent=self)
self.__pool_set = handler.get_result()
if self.__pool_set is None:
msg = 'Unable to parse pool set!'
self.add_error(msg)
else:
self.__number_designs = handler.get_number_designs()
mt = handler.get_molecule_type()
# In theory we could check the default stock concentrations for
# all the single molecule designs. However, for this we would have
# to get the corresponding pools first. Since the handler already
# made sure that we have equal molecule types and also the number
# of designs (1) is always equal it is very unlikely to stumble
# across a different concentration. Even so, the optimizer would
# not find proper stock samples for these designs.
self.__stock_concentration = get_default_stock_concentration(mt)
def __get_pool_set(self):
# Retrieves the pool set from the parsed Excel data stream.
self.add_debug('Obtain pool set ...')
handler = PoolCreationSetParserHandler(self.stream,
parent=self)
self.__pool_set = handler.get_result()
parsed_num_designs = handler.get_number_designs()
if parsed_num_designs != self.number_designs:
msg = 'The number of designs per molecule design pool in the ' \
'request file (%i) differs from the requested number of ' \
'designs (%i).' % (parsed_num_designs, self.number_designs)
self.add_error(msg)
agg = get_root_aggregate(IMoleculeType)
md_type = agg.get_by_id(self.molecule_type)
parsed_mol_type = handler.get_molecule_type()
if parsed_mol_type != md_type:
msg = 'The molecule type of the pools in the request file (%s) ' \
'differs from the requested molecule type (%s).' \
% (parsed_mol_type, self.molecule_type)
self.add_error(msg)
if self.__pool_set is None:
msg = 'Unable to parse library pool set!'
self.add_error(msg)