def test_mod(self):
static, var, _ = genmodstr_to_engine("Carbamidomethyl (C);; Biotin(K) ;",
"300/300.1 (STY);Label:13C(6)15N(4) (H)",
"Myrimatch")
print static, var
self.assertEqual(static,"C 57.021464 K 226.077598")
self.assertEqual(var,"[STY] * 300.000000 [H] * 10.008269")
with self.assertRaises(Exception):
genmodstr_to_engine("Doesnotexist (C)", "", "Myrimatch")
class Test(unittest.TestCase):
def test_mod(self):
static, var, _ = genmodstr_to_engine("Carbamidomethyl (C);; Biotin(K) ;",
"300/300.1 (STY);Label:13C(6)15N(4) (H)",
"Myrimatch")
print static, var
self.assertEqual(static,"C 57.021464 K 226.077598")
self.assertEqual(var,"[STY] * 300.000000 [H] * 10.008269")
with self.assertRaises(Exception):
genmodstr_to_engine("Doesnotexist (C)", "", "Myrimatch")
if __name__ == "__main__":
if len(sys.argv) > 1 and 'test' not in sys.argv[1]:
mod = sys.argv[1]
print "Testing modification '%s'" % mod
try:
for i in ['XTandem', 'Omssa', 'Myrimatch', 'Comet']:
genmodstr_to_engine("", mod, i)
# print out one example to show masses. myri varmod is most compact
_, p, _ = genmodstr_to_engine("", mod, 'Comet')
print p,_
print "OK"
except Exception, e:
raise
print "ERROR"
print e.message
else:
unittest.main()
