def commit(self, msg, ref="HEAD"):
cur_tree = self.index.do_commit(self.workspace)
branch_name = read_file(os.path.join(self.workspace, ".git", "HEAD")).strip("\n").rsplit("/", 1)[-1]
ref_path = os.path.join(self.workspace, ".git", "refs", "heads", branch_name)
parent_sha1 = None
if os.path.exists(ref_path):
parent_sha1 = read_file(ref_path)
committer_name = self.config.config_dict["user"]["name"]
committer_email = "<%s>" % (self.config.config_dict["user"]["email"])
commit_time = int(time.time())
# TO FIX
commit_timezone = time.strftime("%z", time.gmtime())
commit = Commit(
self.workspace,
tree_sha1=cur_tree.sha1,
parent_sha1=parent_sha1,
name=committer_name,
email=committer_email,
timestamp=commit_time,
timezone=commit_timezone,
msg=msg,
)
write_object_to_file(commit.path, commit.content)
write_to_file(ref_path, commit.sha1)
def stage(self, files):
try:
for file in files:
content = read_file(file)
blob = Blob(self.workspace, content)
if not os.path.exists(blob.path):
write_object_to_file(blob.path, blob.content)
stat = os.stat(os.path.join(self.workspace, file))
self.index.add_entry(
file,
ctime=stat.st_ctime,
mtime=stat.st_mtime,
dev=stat.st_dev,
ino=stat.st_ino,
mode=cal_mode(stat.st_mode),
uid=stat.st_uid,
gid=stat.st_gid,
size=stat.st_size,
sha1=blob.sha1,
flags=0,
)
self.index.write_to_file()
except Exception, e:
print "stage file %s error: %s" % (file, e)
def enter_directory_and_initilize_empty_meta_data():
os.chdir('.pygit')
try:
utils.write_object_to_file(globalVars.index_file_name, set())
os.mkdir(globalVars.blob_object_location)
except OSError as e:
if e.errno == errno.ENOENT:
sys.stderr.write('Failed to create repo.\n')
os.chdir('../')
def commit(self, msg):
new_tree = self.index.do_commit(self.workspace)
committer_name = self.config.config_dict['user']['name']
committer_email = '<%s>' % (self.config.config_dict['user']['email'])
commit_time = int(time.time())
commit_timezone = time.strftime("%z", time.gmtime())
commit = Commit(self.workspace, sha1=None, tree_sha1=new_tree.sha1, parent_sha1=self.head_tree, name=committer_name, email=committer_email, \
timestamp=commit_time, timezone=commit_timezone, msg=msg)
write_object_to_file(commit.path, commit.content)
write_to_file(self.head_path, commit.sha1)
def commit(self, msg):
new_tree = self.index.do_commit(self.workspace)
committer_name = self.config.config_dict['user']['name']
committer_email = '<%s>' % (self.config.config_dict['user']['email'])
commit_time = int(time.time())
commit_timezone = time.strftime("%z", time.gmtime())
commit = Commit(self.workspace, sha1=None, tree_sha1=new_tree.sha1, parent_sha1=self.head_tree, name=committer_name, email=committer_email, \
timestamp=commit_time, timezone=commit_timezone, msg=msg)
write_object_to_file(commit.path, commit.content)
write_to_file(self.head_path, commit.sha1)
def _build_tree(path):
dir_arr = []
file_arr = []
for name, entry in path.iteritems():
if isinstance(entry, dict):
mode = stat.S_IFDIR
sha1 = _build_tree(entry).sha1
dir_arr.append({'name':name, 'mode':mode, 'sha1':sha1})
else:
(mode, sha1) = entry
file_arr.append({'name':name, 'mode':mode, 'sha1':sha1})
newtree = Tree(workspace, sorted(dir_arr,key = lambda x:x['name']) + sorted(file_arr,key = lambda x:x['name']))
write_object_to_file(newtree.path, newtree.content)
return newtree
def solve_import(root,
dst_path=None,
add_path=None,
extra_run_lines=None,
cmd_lines=None,
select_pkgs="select-one",
optim_target="approximate",
explicit_installed="direct",
output_type="Dockerfile"):
while root.endswith(os.sep):
root = root[:-1]
pkgver_dict, msg = parse_pyvers_and_pkgvers(root, select_pkgs=select_pkgs)
if pkgver_dict is None:
return None
pkgvers, sys_pkgs, pyver = solve_package(
pkgver_dict,
optim_target=optim_target,
explicit_installed=explicit_installed)
if pkgvers is None:
return None
if output_type == "Dockerfile":
if add_path is None:
add_path = root
output = generate_dockerfile(pkgvers,
sys_pkgs,
add_path,
msg,
pyver=pyver,
extra_run_lines=extra_run_lines,
cmd_lines=cmd_lines)
if not dst_path:
folder_path = get_folder_path(root)
dst_path = os.path.join(folder_path, "Dockerfile")
if not dst_path.endswith("Dockerfile") and os.path.exists(
dst_path) and os.path.isdir(dst_path):
dst_path = os.path.join(dst_path, "Dockerfile")
dst_file = open(dst_path, "w")
dst_file.writelines(output)
dst_file.close()
else: # json
output = generate_json(pkgvers, sys_pkgs, pyver, msg)
if not dst_path:
folder_path = get_folder_path(root)
dst_path = os.path.join(folder_path, "dependency.json")
if not dst_path.endswith("dependency.json") and os.path.exists(
dst_path) and os.path.isdir(dst_path):
dst_path = os.path.join(dst_path, "dependency.json")
write_object_to_file(dst_path, output)
return dst_path, msg
def stage(self, files):
try:
for file in files:
content = read_file(file)
blob = Blob(self.workspace, content)
if not os.path.exists(blob.path):
write_object_to_file(blob.path, blob.content)
stat = os.stat(os.path.join(self.workspace, file))
self.index.add_entry(file, ctime=stat.st_ctime, mtime=stat.st_mtime, dev=stat.st_dev, ino=stat.st_ino, mode=cal_mode(stat.st_mode), \
uid=stat.st_uid, gid=stat.st_gid, size=stat.st_size,sha1=blob.sha1, flags=0)
self.index.write_to_file()
except Exception, e:
print 'stage file %s error: %s' % (file, e)
def _build_tree(path):
dir_arr = []
file_arr = []
for name, entry in path.iteritems():
if isinstance(entry, dict):
mode = stat.S_IFDIR
sha1 = _build_tree(entry).sha1
dir_arr.append({'name': name, 'mode': mode, 'sha1': sha1})
else:
(mode, sha1) = entry
file_arr.append({'name': name, 'mode': mode, 'sha1': sha1})
newtree = Tree(
workspace,
sorted(dir_arr, key=lambda x: x['name']) +
sorted(file_arr, key=lambda x: x['name']))
write_object_to_file(newtree.path, newtree.content)
return newtree
def commit(self, msg, ref='HEAD'):
cur_tree = self.index.do_commit(self.workspace)
branch_name = read_file(os.path.join(self.workspace, '.git', 'HEAD')).strip('\n').rsplit('/', 1)[-1]
ref_path = os.path.join(self.workspace, '.git', 'refs', 'heads', branch_name)
parent_sha1 = None
if os.path.exists(ref_path):
parent_sha1 = read_file(ref_path)
committer_name = self.config.config_dict['user']['name']
committer_email = '<%s>' % (self.config.config_dict['user']['email'])
commit_time = int(time.time())
#TO FIX
commit_timezone = time.strftime("%z", time.gmtime())
commit = Commit(self.workspace, tree_sha1=cur_tree.sha1, parent_sha1=parent_sha1, name=committer_name, email=committer_email, \
timestamp=commit_time, timezone=commit_timezone, msg=msg)
write_object_to_file(commit.path, commit.content)
write_to_file(ref_path, commit.sha1)
def add(relative_file_path):
try:
pygit_repo_path = utils.find_pygit_repo()
except utils.RepoNotFoundException:
sys.stderr.write('Could not find pygit repo.')
sys.exit(41)
# Check if file path exists
if not os.path.exists(relative_file_path):
sys.stderr.write('File to add does not exist.')
sys.exit(43)
# Check if previously tracked and so forth for other status information.
start_cwd = os.getcwd()
os.chdir(pygit_repo_path + '/.pygit')
index_set = utils.read_object_from_file(globalVars.index_file_name)
index_set.add(relative_file_path)
utils.write_object_to_file(globalVars.index_file_name, index_set)
os.chdir(start_cwd)
def commit(commit_message):
''' Commit current index to disk. '''
repo_path = find_pygit_repo()
current_index_path = repo_path + '/' + globalVars.current_index_file_name
commit_log_path = repo_path + '/' + globalVars.commit_log
if os.path.exists(current_index_path):
sys.stdout.write('Nothing to commit.')
else:
# This should be a more interesting data structure.
if os.path.exists(commit_log_path):
commit_log_list = utils.read_object_from_file(commit_log_path)
else:
commit_log_list = []
# do stuff with commit_log_list
current_index_dict = utils.read_object_from_file(current_index_path)
for filename, file_contents = current_index_dict.iteritems():
# do nothing for now. Compute hash later
pass
# Get first file name are representative hash string.
representative_hash_string = utils.compute_string_hash(current_index_dict.iteritems()[0][0])
if not os.path.exists(globalVars.blob_object_location):
utils.write_error_message_and_exit("Broken pygit repo. Cannot find blob objects location")
else:
current_commit_file_name = globalVars.blob_object_location + '/' representative_hash_string)
utils.write_object_to_file(current_commit_file_name, current_index_dict)
commit_log_list.append((representative_hash_string, current_commit_file_name))
utils.write_object_to_file(commit_log_path)
os.remove(current_index_path)
import os
import re
import config
from ModuleParser.file_parser import parse_import_modules
from ModuleParser.folder_parser import extract_all_py_filepath, parse_custom_top_levels
from ModuleParser.module_filter import filter_custom_modules, apart_standard_modules
from utils import read_object_from_file, write_object_to_file
from ModuleParser.neo4j_reader import get_pyvers_by_module, get_all_pyvers, \
get_python_features, get_pkgvers_by_module_pyvers, get_os_by_pkg, get_std_top_modules, get_rank_by_pkg
std_top_levels = read_object_from_file(config.STD_TOP_CACHE_PATH)
if not std_top_levels:
std_top_levels = get_std_top_modules()
write_object_to_file(config.STD_TOP_CACHE_PATH, std_top_levels)
def parse_modules(root):
# both file and folder are ok
# extract all custom top level modules and python files
custom_top_levels = list()
all_py_filepath = list()
if os.path.isdir(root):
custom_top_levels.extend(parse_custom_top_levels(root, need_init=False))
all_py_filepath.extend(extract_all_py_filepath(root))
elif root.endswith(".py"):
all_py_filepath.append(root)
else:
return None, None, None, None
# extract top and second level modules used
pkg, method = pkgmth.split("#")
if method == "pip" or pkg == "python":
continue
dep_dict[pkgmth] = dict()
ver_dict = pkgver_dict[pkgmth]
for ver in ver_dict:
dep_dict[pkgmth][ver] = list()
return dep_dict
def convert_pkgvers_to_constrain_dict(pkgvers):
constrain_dict = dict()
for pkgmth in pkgvers:
pkg, method = pkgmth.split("#")
if method == "pip" or pkg == "python":
constrain_dict[pkg] = pkgvers[pkgmth]
else:
constrain_dict[pkgmth] = pkgvers[pkgmth]
return constrain_dict
pip_deps_dict = read_object_from_file(config.PIP_DEPS_CACHE_PATH)
if not pip_deps_dict:
print("Caching pip dependencies in file...")
pip_deps_dict = get_pip_deps()
write_object_to_file(config.PIP_DEPS_CACHE_PATH, pip_deps_dict)
print("Dependencies cached.")