args.limit = vdjpy.prompt_for_integer('limit', 5000)
kwargs['limit'] = args.limit
# -o
if args.offset is None:
args.offset = vdjpy.prompt_for_integer('offset value', 0)
kwargs['offset'] = args.offset
# get projects
projects = vdjpy.get_vdj_projects(my_agave, kwargs)
# if -s
if args.alphabetical_sort:
projects.sort(key = lambda e: e['value']['name'])
# if -v
if args.verbose is True:
print json.dumps(projects, default = vdjpy.json_serial, sort_keys = True, indent = 4, separators = (',', ': '))
# if no -v
else:
for item in projects:
# if args.show_uuids, print uuid with name
if args.show_uuids:
print item.value['name'] + '\t' + item.uuid
else:
print item.value['name']
# write to cache
vdjpy.write_json(projects, projects_cache)
args.refresh = cache_dict.get('refresh_token')
if args.refresh is None or args.refresh == unicode(''):
print 'Refresh token in cache does not exist or is empty'
args.refresh = vdjpy.prompt_user('refresh token')
# -p
if args.refresh is '' and args.password is None:
args.password = getpass.getpass('Enter password: '******'The username, password, or refresh token is not valid. Please try again.')
# if -s, insert correct values and write to user_cache
if args.save:
cache_dict['username'] = args.username
cache_dict['access_token'] = response['result']['access_token']
cache_dict['refresh_token'] = response['result']['refresh_token']
cache_dict['expires_in'] = response['result']['expires_in']
cache_dict['created_at'] = current_time
cache_dict['expires_at'] = time.ctime(current_time + response['result']['expires_in'])
vdjpy.write_json(cache_dict, user_cache)
# print tokens
print 'Access token is:', str(response['result']['access_token'])
print 'Refresh token is:', str(response['result']['refresh_token'])
