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Convert html phylogenetic trees from a wikipedia article into a standard bioinformatics format.

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Gullumluvl/wikipedia2phylo

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Wikipedia page to phylogenetic tree converter

Give me a search term (e.g 'Bilateria') and I will parse the corresponding html tree from wikipedia article into a format for bioinformaticians (newick).

Run from the command-line

./wikipedia2phylo.py --help

Requirements

  • Python 3
    • requests
    • BeautifulSoup4
    • ete3

License

This code is licensed under the GNU General Public License (GPL) v.3.

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Convert html phylogenetic trees from a wikipedia article into a standard bioinformatics format.

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