Alignment-Based Fungal Gene Prediction method
Published in BMC Bioinformatatics (2013):
Automated alignment-based curation of gene models in filamentous fungi
Ate van der Burgt, Edouard Severing Jérôme Collemare and Pierre J.G.M. de Wit
Corresponding authors: ate.vanderburgt@wur.nl pierre.dewit@wur.nl
Within the abfgp-2.f code trunk an extended README.txt is placed which contains the following sections.
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Installation
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Required third party software
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Required Python modules
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Adjusting the settings/executables.py file
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Testing ABFGP
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Explaining the AbgpGeneLocusDirectory
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Running ABFGP (examples)
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Explanation of command line options for ABFGP (examples)
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How to use ABFGP in your research
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The other ABFGP executables (examples)
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Abbreviations used in ABFGP code and documentation