File description:
-DeltaNotch.cc3d: index file for CC3D
-Simulation
-DN_Collier.sbml: Delta-Notch signaling netwrok in SBML format
-DN_Collier_1.sbml: Delta-Notch signaling netwrok in SBML format
-SLIMI4R.sbml:PFLI signlaing network in SBML format
-DeltaNotch.py: CC3D main file
-DeltaNotchSteppables.py: Python script to program 3D crypt tissue.