GitHub - LitaoShen/Dipy_Matlab_DTI_Toolkit: This work used dipy and matlab to develop a toolkit that can visualize DTI data and also derive FA, MD and display them. It also can generate streamline and use the quickbundle algorithm module to cluster the streamlines

LitaoShen / Dipy_Matlab_DTI_Toolkit Public

This work used dipy and matlab to develop a toolkit that can visualize DTI data and also derive FA, MD and display them. It also can generate streamline and use the quickbundle algorithm module to cluster the streamlines

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Name		Name	Last commit message	Last commit date
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.gitattributes		.gitattributes
.gitignore		.gitignore
HARDI150.nii.gz		HARDI150.nii.gz
QB.pkl		QB.pkl
RegisterMultimodalImagesExample.m		RegisterMultimodalImagesExample.m
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.bval		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.bval
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.bvec		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.bvec
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.hdr		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.hdr
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.img		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.img
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.mat		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.mat
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.nii.gz		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1.nii.gz
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_evecs.nii.gz		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_evecs.nii.gz
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_fa.nii.gz		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_fa.nii.gz
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_md.nii.gz		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_md.nii.gz
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_rgb.nii.gz		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_rgb.nii.gz
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_streamlines.trk		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_streamlines.trk
STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_tracks.png		STUDENT2_WIP_DTI_medium_iso_SENSE_4_1_tracks.png
Test0.zip		Test0.zip
bch2.hdr		bch2.hdr
bch2.img		bch2.img
config_EA.fig		config_EA.fig
config_EA.m		config_EA.m
cool.png		cool.png
cover.jpg		cover.jpg
csd_streamline.py		csd_streamline.py
csd_streamline.pyc		csd_streamline.pyc
dcmHeaders.mat		dcmHeaders.mat
dicom2streamlines.py		dicom2streamlines.py
dti_fa.py		dti_fa.py
ellipsoid - Copy.py		ellipsoid - Copy.py
ellipsoid.py		ellipsoid.py
ellipsoido.py		ellipsoido.py
fa.png		fa.png
fa.py		fa.py
fa_single.py		fa_single.py
fa_t.py		fa_t.py
fornix_centroids.png		fornix_centroids.png
fornix_clust.png		fornix_clust.png
fornix_initial.png		fornix_initial.png
gui.fig		gui.fig
gui.m		gui.m
hs_err_pid15956.log		hs_err_pid15956.log
mask.fig		mask.fig
mask.m		mask.m
matpy.m		matpy.m
md.py		md.py
md_gray.py		md_gray.py
ncsd_streamline.py		ncsd_streamline.py
ncsd_streamline.pyc		ncsd_streamline.pyc
origin.py		origin.py
quickbundle.py		quickbundle.py
readtest.py		readtest.py
registration.py		registration.py
small_101D.bval		small_101D.bval
small_101D.bvec		small_101D.bvec
small_101D.nii		small_101D.nii
small_101D.nii.gz		small_101D.nii.gz
streamline.py		streamline.py
t0.bval		t0.bval
t0.bvec		t0.bvec
t0.nii.gz		t0.nii.gz
t0_evecs.nii.gz		t0_evecs.nii.gz
t0_fa.nii.gz		t0_fa.nii.gz
t0_md.nii.gz		t0_md.nii.gz
t0_rgb.nii.gz		t0_rgb.nii.gz
t0_streamlines.trk		t0_streamlines.trk
t0_tracks.png		t0_tracks.png
tcsd_streamline.py		tcsd_streamline.py
tcsd_streamline.pyc		tcsd_streamline.pyc
tensor_ellipsoids.png		tensor_ellipsoids.png
tensor_evecs.nii.gz		tensor_evecs.nii.gz
tensor_fa.nii.gz		tensor_fa.nii.gz
tensor_odfs.png		tensor_odfs.png
tensor_rgb.nii.gz		tensor_rgb.nii.gz
tensor_streamlines.trk		tensor_streamlines.trk
tensor_tracks.png		tensor_tracks.png
tensors_md.nii.gz		tensors_md.nii.gz
test1.m		test1.m

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