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Metabolomics Galaxy Tools

Folders

  • /planemo-pw is a project dir for for pathway analysis. Mostly under construction.
  • /planemo-de for normalization + differential abundance analysis. metab-de.R and metab-de.xml.
  • /scripts for scratch work.
  • /data-<something> folders for test data sets.

Setup (Generic)

# env setup
python3 -m venv xenv
source xenv/bin/activate

pip3 install planemo

# deactivate env
deactivate